Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01084 ATGGCGGAGGACATGACTAAGGAGAAATTAGAGCAGCTTTGTTTGAAGGATAAGCAAACCTATGCTGCTTCTAGTTCTTCTATATCAGATGGAAATGGCAGTGCTATTCTCACATCATCAAGGAAAACGGGATCAGCATTGCCGTCTAATAGGAGGACCACTGGCCCTGTTAGACGGGTAAAGGATGGTTGGAAGGAAAAGGAGGATGAAACATTAAAGAATGCTGTTGAAGTTTTTAATGGCAAGAATTGGAAGAAAATAGCTGAGTTTTTTCCTGATAAATCAGAAGTTCAATGTCTTCACAGATGGAGAAAGGTTCTTGATCCTGAACTTGTTAAAGGACATTGGACAAAGGAGGAGGATGACAAAATAATTGAATTGGTGTCTATACATGGACCTACAAAATGGTCTTTGGTATCCAAGTCTTTGCCTGGTCGAATAGGAAAACAGTGCCGAGAACGATGGTGCAATCACCTTAATCCAGACATAAAGAAGGATCCCTGGACTTTGGAGGAGGAATTGACCCTCATGAAAGCTCATTGTATACATGGCAACAGATGGGCTAAAATAGCCAAGGATCTTCATGGAAGGACTGATAATGCAATAAAGAATCACTGGAATGGTTCTTTGAAGAAAAAGAAGGATTTCTATTTAGCTAATGGAAGACTTCCACCCATTCCAAAGAACAGTATGGAAGTTGCTGTCAAAGATACAGATAAACATTCTACAACTGACACAGTTCATGTTTGTTCAAATAAAGGATTAAATGCTACTATTGCATTATCATCTAAAACTACAGACATTACTAATCTTGATAGCAGTGATAAGAATCAACTAAAATCTTCTGGAATAGTTATAGAGGTTAGTGATTCTTCAAGTGTTCCTCCGAAAAGATGTACTGATTCTGATTGTATACAGTACAGTAGATTATTCAAGGAAGGTCTCAGCTGTAGTAATTTGGAATCAGGATCAGAAAATAATTTTAAAATAAACAGAGCGTCAAAATATGTGAATAGTGATCATTGTCTGAGTAATAGTGATAATAACAATGACAAATCAGCCAGAGTTTTTTATTCAAAAAGTCAAACCTTTGGTTCTTTTTGTTATGAACCACCACAGTTTGATAATCCACGTTCTTCAGAATCTTTTAATTTTAACATCTCTGGAGTGCAGAATGAGTATTTTTCTCCTTCAATAAGATCCTCTATTGGTTTTGTAACTCCATCTCATGTGAAGGAAATTGAGCCATGCTCAGAATCTATTGAATCAATATTGAGAAAGGCTGCCAAAACTTTTCCAACCCCTTCAATAATAAGAAAGAGAAGAAATGGAGGTGAATTACCTGCCACTCCTAGAAAGCTTGCAAATACAGTTAATAATTCACGTGCTGATAATGGAGAAGTGAGAACAAATGATGTTTCTTGTTCTGAATTTGTGAGATTATCTGTCAGTTCAGCTAGCCATGAATATGAGAGTAATCTTCACAATAAGACTTTCAACATAACTCCTCAATACCGATTCAGATCCAGAAAAACAGCTGTTAAGTCTTTGAAGAAACAACTTGATTCTGCATTTTACAAGGAGAGACGTGCTTGTGAGATGGAAAGATCTACAAAGACTGTTGTGATGACGGAAGATAGTCTTCATAAAACAAAATTGGCAGAGACATAG 1671 0.3668 MAEDMTKEKLEQLCLKDKQTYAASSSSISDGNGSAILTSSRKTGSALPSNRRTTGPVRRVKDGWKEKEDETLKNAVEVFNGKNWKKIAEFFPDKSEVQCLHRWRKVLDPELVKGHWTKEEDDKIIELVSIHGPTKWSLVSKSLPGRIGKQCRERWCNHLNPDIKKDPWTLEEELTLMKAHCIHGNRWAKIAKDLHGRTDNAIKNHWNGSLKKKKDFYLANGRLPPIPKNSMEVAVKDTDKHSTTDTVHVCSNKGLNATIALSSKTTDITNLDSSDKNQLKSSGIVIEVSDSSSVPPKRCTDSDCIQYSRLFKEGLSCSNLESGSENNFKINRASKYVNSDHCLSNSDNNNDKSARVFYSKSQTFGSFCYEPPQFDNPRSSESFNFNISGVQNEYFSPSIRSSIGFVTPSHVKEIEPCSESIESILRKAAKTFPTPSIIRKRRNGGELPATPRKLANTVNNSRADNGEVRTNDVSCSEFVRLSVSSASHEYESNLHNKTFNITPQYRFRSRKTAVKSLKKQLDSAFYKERRACEMERSTKTVVMTEDSLHKTKLAET* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01084 556 MobiDBLite consensus disorder prediction 21 52 - -
Lapu10g01084 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 163 IPR017930 -
Lapu10g01084 556 Gene3D - 113 164 - -
Lapu10g01084 556 ProSiteProfiles Myb-like domain profile. 61 107 IPR001005 -
Lapu10g01084 556 MobiDBLite consensus disorder prediction 21 57 - -
Lapu10g01084 556 ProSiteProfiles Myb-like domain profile. 108 159 IPR001005 -
Lapu10g01084 556 CDD SANT 64 107 IPR001005 -
Lapu10g01084 556 ProSiteProfiles Myb-like domain profile. 160 210 IPR001005 -
Lapu10g01084 556 Gene3D - 60 112 - -
Lapu10g01084 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 164 214 IPR017930 -
Lapu10g01084 556 Pfam Myb-like DNA-binding domain 63 107 IPR001005 -
Lapu10g01084 556 FunFam Transcriptional activator Myb isoform A 113 165 - -
Lapu10g01084 556 CDD SANT 116 159 IPR001005 -
Lapu10g01084 556 PANTHER MYB PROTEIN-RELATED 61 107 - -
Lapu10g01084 556 SMART sant 164 212 IPR001005 -
Lapu10g01084 556 SMART sant 60 109 IPR001005 -
Lapu10g01084 556 SMART sant 112 161 IPR001005 -
Lapu10g01084 556 FunFam Transcriptional activator Myb isoform A 60 112 - -
Lapu10g01084 556 CDD SANT 167 207 IPR001005 -
Lapu10g01084 556 Gene3D - 167 213 - -
Lapu10g01084 556 SUPERFAMILY Homeodomain-like 110 206 IPR009057 -
Lapu10g01084 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 107 IPR017930 -
Lapu10g01084 556 SUPERFAMILY Homeodomain-like 59 114 IPR009057 -
Lapu10g01084 556 Pfam Myb-like DNA-binding domain 116 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01084 Lapu-Chr10 12979849 12984592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01084 1 547 MYB Transcription Factor Family AT3G09370 39.677 3.68e-111 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu10g01084 Myb_DNA-bind_6 4.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01084 K09422 - gmx:100777236 590.497