Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01080 ATGGATGGAAAAGGAAGCTCTGCGGAAAGGGAAGAACAGAGCAAACAAAAGGGAAAAGCAGAGACGGTGTCGTTTCGGAAGCTGTTCGCGTTTGCGGACTGCGCAGACATTATGTTGATGGTGGTTGGAAGCGTTGGCGCCGTTGGAAACGGTTTGGGGTTTCCTTTGATGACATTACTGTTCGGTGAAATAATTGATGCCTTCGGCAGTAACCAGAACAGCCCCAACATAGTACAAAAAGTGTCCCAGGTTTCTCTTAAATTTGTGTACTTGGCAGTAGGATCTGGGGTCGCAGCTTTCCTACAGGTGACATGCTGGATGGTGACGGGGGAGAGACAGGCTGGAAGAATAAGGGGACTGTATTTGCAAACTATTCTAAGACAAGACATTGCTTTCTTTGACAAAGAAACAAACACAGGTGAGGTGATAGGGAGAATATCAGGTGACACGGTTCTCATTCAAGATGCAATGGGAGAGAAGGTTGGGAAATTTGTGCAGTTGATAGCAACATTCATAGGGGGCTTTGCGATAGCATTTGCCAAAGGGTGGCTTCTTACATTGGTCATGTTGTGCATTCTTCCACTCCTCGTTCTGTCAGGGGCTGCTATGGCCATCATCCAAGGCAGAATGGCTTCCAGAGGTCAAGCTGCCTACGCAAAAGCTGCACACGTAGTTCAGCAGACCATTGCCTCTATAAGAACAGTTGCATCCTTTACTGGGGAAAAACAAGCAGTGTCTAATTACAGAAAATTTCTTGTAGAAGCTTACGTAACAGGCGTTCATGAAGGTTCTGTTGCTGGCGTGGCCCTTGGAACAGTTATGCTTCTTGTTTTCAGTGGTTATGCTTTGGCAGTGTGGTTCGGCGCAAAGATGATAACTGAAAATGAAAAAAAATATAATGGGGGCACAGTGCTCAATGTGATTGCTTCTTTGTTAACTGCTTCAATGTCTCTTGGGGAGGCATCCCCTATCATGAGTGCTTTTGCTGCGGGTCAAGCTGCAGCTTACAAAATGTTTGAAACAATTGAGAGGAAGCCAGAGATAGATGCTTATGATCCAAATGGGAAAATATTAGAGGATATTGAAGGTGAAATAGAGTTGAGGGATGTTTGTTTCAGTTATCCAACGAGGCCTGAGGAGTTGATACTAAGTGGGTTCTCTCTTAATATACCAATTGGTACAAGTGTTGCACTAGTGGGACAAAGCGGGAGTGGAAAATCCACGGTTATCAGTTTGATAGAGAGATTCTATGATCCTCAAGCAGGTGAAGTTCTTATTGATGGCATTAACCTGAAATTGTTTCAGCTTAGGTGGATGAGGGGGAAAATTGGCCTTGTTAACCAGGAGCCAGTGTTGTTTGCATCAAGTATTAAGGATAACATCGCATATGGAAAGGAGGGAGCCACAATTGAAGAGATAAGATCAGCATCTGAACTTGCAAATGCTACTAAATTCATTGATAAACTGCCACAGGGATTGAACACAACGGTTGGTGAACAAGGAACTCAACTCTCTGGTGGACAGAAGCAGCGCATTGCCATAGCAAGAGCAATCCTAAAGGATCCAAGAATTCTACTTCTGGACGAAGCTACAAGTGCCCTTGATGCAGAGTCTGAAAGGACAGTGCAAGAGGCTCTAGACAGGGTCATGGTTAACAGAACTACTGTTGTAGTGGCACATCGGTTGAGCACAGTGAGGAATGCTGATACGATTGTTGTAATTCATAGAGGGAAGGTGGTTGAAAAAGGAACACACTCAGAACTAGTCAAGGATCTCGAGGGAGCTTACTCTCAATTGATACGTTTACAAGAAGTGAATAAGGAATCAGAAGAAACTACGAGCTCTCACATGAAGAGTGAACTTTCTACGGAATCCTCTAGGCAGTCAACCAAAAAGATATCAACTAAGAGATCCATTAGTAGGGGATCATCTTTGGGGAGTAGTAGCCGCCATTCATTTTCTCTTGTTAGTGTGCCTGATACTGAAGTGGAAGACGCATTACATGAAAAACAAGCACAAGAGGTTTCACTCTACCGGCTTGCTTCCCTCAACAAACCAGAGATTCCAGTTCTTCTGATTGGATGTGTAGCTGCCATAGCAAATGGTGTTATACTTCCCATCTTTGGGGTGTTGATTTCCAGTGCGGTGAAAACATTTTATGAACCAGTTGATGAGATGAAAAAGGACTCAAAATTTTGGGCACTTATGTTTGTGGTTCTTGGTCTTGCATCATTGTTGGTAATTCCAGCTCGAGCATACTTTTTTTCTGTGGCTGGATGGAAGTTAATCCAACGTATAAGGATAATATGTTTTGAGAAAGTGGTGAACATGGAGGTTGGTTGGTTTGATGAGCCTAACAACTCAAGTGGGGCAATTAGTGCAAGGCTCTCAGCAATTGCTGCTTCTGTGCGCACCCTTGTTGGTGATGCACTGGGGCTGTTGGTCCAAAATTTAACATGTGCCTTGGCAGGTTTGATTATTGCTTTCATTGCATGCTGGCAGTTGGCTTTGATTATTCTTGTCTTGATTCCCCTTATTGGCGCAAATGGCTATGTTCAAACGAAATTCATGAAGGGGTTCAGCAAAGATGGAAAGATGATGTACGAGGAAGCAAGCCAAGTTGCTAAGGATGCAGTTGGAAATATAAGAACAGTAGCTTCTTTCTGTGCTGAAGATAAGGTCATGGAATTGTATAGGAAGAAATGTGAAGACCCCATGAAAACAGGGATATGGCAAGGGTTGATCAGTGGATCAGGATTTGGGGTTTCATTTTTCTTACTATTTTGTGTCTATGCCACTAGTTTCTATGCAGGAGCTAGACTAGTGGCCGCTGGAGAAACATCATTCTCAGAAGTTTTTCGGGTTTTCTTCGCTTTAACTATGGCAGCTATAGGAGTTTCCCAGTTTAGCACAATTTCTCCTGATTCTGGCAAAGCCAAGTCAGCCACTGCTGCCATATTTGGAATAATTGATAAGAAGTCAGAGATAGATCCAAGTGATGAGACTGGTACCACATTGGATATAGTTGAGGGAGAAATTGAGCTTCATCATGTGAGCTTCAAGTACCCATCAAGGCCAAAGATTCAGATTTTTCGAGACCTTAACTTGGTTATCCATTCTGGCAAGACAGTGGCCCTTGTTGGTGAAAGTGGATGTGGTAAATCAACAGTGATTGCGTTGTTGCAGAGATTTTATGTTCCCAATTCTGGTGAAATCACACTTGATGGTGTACCAATAGGGGAGTTACAACTGAAGTGGTTTAGGCAGCAAATGGGTTTTGTAAGCCAAGAACCAATATTGTTCAATGACACTATTCGTGGTAACATTGCTTATGGAAAGGGAGGTGATGCAACTGAAGCAGAAATCATAGCAGCAGCAGAACTAGCTAATGCCCATGTATTTATTAGTGCCTTACAACAGGGTTATGACACTGTAGTGGGAGAAAGGGGAGCACAATTATCTGGTGGGCAGAAGCAAAGGGTAGCCATTGCCCGTGCATTGATCAAAAGTCCAAAGATATTGCTATTAGACGAAGCCACAAGTGCATTAGACGCTGAGTCAGAGAGAGTTGTTCAGGATGCATTGGACAAAGTCATGGTGAATAGGACCACTGTGGTTGTGGCACATCGCCTATCTGCAATAAAAAATGCAGATTTGATTTCTGTTGTCAAAGATGGAGTCATCGTGGAGAAGGGAAGCCATGAAACACTCGTCAGACTCAAGGATGGGTTTTATGCTTCCTTAGTCCAACTTCACCCAAATGCTTCAAAAACTAGAGTTCCC 3783 0.4343 MDGKGSSAEREEQSKQKGKAETVSFRKLFAFADCADIMLMVVGSVGAVGNGLGFPLMTLLFGEIIDAFGSNQNSPNIVQKVSQVSLKFVYLAVGSGVAAFLQVTCWMVTGERQAGRIRGLYLQTILRQDIAFFDKETNTGEVIGRISGDTVLIQDAMGEKVGKFVQLIATFIGGFAIAFAKGWLLTLVMLCILPLLVLSGAAMAIIQGRMASRGQAAYAKAAHVVQQTIASIRTVASFTGEKQAVSNYRKFLVEAYVTGVHEGSVAGVALGTVMLLVFSGYALAVWFGAKMITENEKKYNGGTVLNVIASLLTASMSLGEASPIMSAFAAGQAAAYKMFETIERKPEIDAYDPNGKILEDIEGEIELRDVCFSYPTRPEELILSGFSLNIPIGTSVALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKLFQLRWMRGKIGLVNQEPVLFASSIKDNIAYGKEGATIEEIRSASELANATKFIDKLPQGLNTTVGEQGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERTVQEALDRVMVNRTTVVVAHRLSTVRNADTIVVIHRGKVVEKGTHSELVKDLEGAYSQLIRLQEVNKESEETTSSHMKSELSTESSRQSTKKISTKRSISRGSSLGSSSRHSFSLVSVPDTEVEDALHEKQAQEVSLYRLASLNKPEIPVLLIGCVAAIANGVILPIFGVLISSAVKTFYEPVDEMKKDSKFWALMFVVLGLASLLVIPARAYFFSVAGWKLIQRIRIICFEKVVNMEVGWFDEPNNSSGAISARLSAIAASVRTLVGDALGLLVQNLTCALAGLIIAFIACWQLALIILVLIPLIGANGYVQTKFMKGFSKDGKMMYEEASQVAKDAVGNIRTVASFCAEDKVMELYRKKCEDPMKTGIWQGLISGSGFGVSFFLLFCVYATSFYAGARLVAAGETSFSEVFRVFFALTMAAIGVSQFSTISPDSGKAKSATAAIFGIIDKKSEIDPSDETGTTLDIVEGEIELHHVSFKYPSRPKIQIFRDLNLVIHSGKTVALVGESGCGKSTVIALLQRFYVPNSGEITLDGVPIGELQLKWFRQQMGFVSQEPILFNDTIRGNIAYGKGGDATEAEIIAAAELANAHVFISALQQGYDTVVGERGAQLSGGQKQRVAIARALIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSAIKNADLISVVKDGVIVEKGSHETLVRLKDGFYASLVQLHPNASKTRVP 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01080 1261 ProSitePatterns ABC transporters family signature. 1153 1167 IPR017871 GO:0005524|GO:0016887
Lapu10g01080 1261 CDD ABC_MTABC3_MDL1_MDL2 1013 1251 - -
Lapu10g01080 1261 FunFam ABC transporter B family member 1 671 979 - -
Lapu10g01080 1261 Pfam ABC transporter transmembrane region 691 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g01080 1261 Pfam ABC transporter transmembrane region 44 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g01080 1261 CDD ABC_6TM_Pgp_ABCB1_D2_like 681 996 - -
Lapu10g01080 1261 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Lapu10g01080 1261 Pfam ABC transporter 1032 1181 IPR003439 GO:0005524
Lapu10g01080 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1013 1250 IPR003439 GO:0005524
Lapu10g01080 1261 Gene3D ABC transporter type 1, transmembrane domain 658 1001 IPR036640 GO:0005524|GO:0016020
Lapu10g01080 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 603 IPR027417 -
Lapu10g01080 1261 CDD ABC_MTABC3_MDL1_MDL2 365 603 - -
Lapu10g01080 1261 SMART AAA_5 1040 1234 IPR003593 GO:0016887
Lapu10g01080 1261 SMART AAA_5 392 578 IPR003593 GO:0016887
Lapu10g01080 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g01080 1261 Gene3D - 1004 1259 IPR027417 -
Lapu10g01080 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 692 978 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g01080 1261 PANTHER ABC TRANSPORTER B FAMILY 6 607 IPR039421 -
Lapu10g01080 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1004 1251 IPR027417 -
Lapu10g01080 1261 FunFam ABC transporter B family member 1 355 604 - -
Lapu10g01080 1261 Pfam ABC transporter 384 532 IPR003439 GO:0005524
Lapu10g01080 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Lapu10g01080 1261 FunFam ABC transporter B family member 1 1003 1253 - -
Lapu10g01080 1261 MobiDBLite consensus disorder prediction 606 652 - -
Lapu10g01080 1261 SUPERFAMILY ABC transporter transmembrane region 679 998 IPR036640 GO:0005524|GO:0016020
Lapu10g01080 1261 Gene3D ABC transporter type 1, transmembrane domain 27 622 IPR036640 GO:0005524|GO:0016020
Lapu10g01080 1261 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 326 - -
Lapu10g01080 1261 FunFam ABC transporter B family member 9 27 361 - -
Lapu10g01080 1261 Gene3D - 355 604 IPR027417 -
Lapu10g01080 1261 MobiDBLite consensus disorder prediction 618 652 - -
Lapu10g01080 1261 SUPERFAMILY ABC transporter transmembrane region 21 349 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01080 Lapu-Chr10 12902284 12912149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01080 13 1252 Calmodulin-binding Proteins AT2G36910 44.471 0.0 1036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01080 K05658 - gmx:100777909 1900.18