Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01071 ATGCAGTCTCATGGGGAGGGTTCAATCAGGCCAGGATCCATGGCTGATAGGGCAAGGATGGCCAACATGCCAATGCCAGAGGTTGCACTCAAGTGTCCACGCTGCGAATCCACCAACACCAAATTTTGCTACTTCAACAACTACAGTCTCTCTCAGCCCCGCCACTTCTGCAAGACCTGCAGAAGGTACTGGACCAGAGGTGGCGCCCTAAGGAGCGTCCCCGTCGGCGGAGGCTGCAGGAGGAACAAGCGGAGCAAAGGAAGCGGCGGTGGCGGCGGCTCCAAGTCTCCAGCAAGCTCTGACCGCCAAACAGGAAGTGTCAGTTCCACCAACTCCGTATCTTCCAAGAGTGAGAGAATAGGGCTTGCACCCCAAATTCCACCTCTCAGATTCATGCCTCCATTGCATCAACTCAGTGACTTCGGAGCTGGAGATATTGGCCTAAACTATGGTCTCAGTAATGGCTCAATGGGAGGAGTAGGGGACTTGAGTTATCAAATTGGAGCAAGTGCTTTTGGTGGTGCCTCTTCAATCTTTTCAGCACCTGGTTTGGACCAATGGAGAATGCCGCAGCAGTTTCCCCTCTTCGCTGCCTTGGAAGGTTCATCACCTGCTTCTAATGTATACCCTTTTGAAGGAAGTGCTGAGGTGAGTGGATTCATGAGGCCAAAGGTTTCAACTTCTGGGATCATGACTCAGCTAGCTTCAGTCAAAATGGAAGATAGTAGAGAACCTAACTTATTGTCAACCCAGTTCTTGGGAAACAATAATCCAGTGAGTGAACAATACTGGACCAGTGCTAATTCTGCATCATGGACAGATATTTCTGGTTTTAGCTCTTCTTCCACTACTAATAACCATCTATAG 867 0.4983 MQSHGEGSIRPGSMADRARMANMPMPEVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKGSGGGGGSKSPASSDRQTGSVSSTNSVSSKSERIGLAPQIPPLRFMPPLHQLSDFGAGDIGLNYGLSNGSMGGVGDLSYQIGASAFGGASSIFSAPGLDQWRMPQQFPLFAALEGSSPASNVYPFEGSAEVSGFMRPKVSTSGIMTQLASVKMEDSREPNLLSTQFLGNNNPVSEQYWTSANSASWTDISGFSSSSTTNNHL* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01071 288 MobiDBLite consensus disorder prediction 74 119 - -
Lapu10g01071 288 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Lapu10g01071 288 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Lapu10g01071 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 129 IPR045174 GO:0003700|GO:0006355
Lapu10g01071 288 Pfam Dof domain, zinc finger 29 84 IPR003851 GO:0003677|GO:0006355
Lapu10g01071 288 MobiDBLite consensus disorder prediction 92 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01071 Lapu-Chr10 12719149 12720157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01071 2 284 C2C2-Dof Transcription Factor Family AT3G55370 40.594 4.24e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu10g01071 zf-Dof 4.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01071 - - pvu:PHAVU_010G013500g 485.723