Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01049 ATGGAACAGGGTCAATGTTGGACAAAGAGGAAGTACTCTTTGAGCTCTAGTCTTAGTTCACCAACCAACCCTTCCTATGGTGAGTCGTGGGAAGAACAAGCTTTTGCAGAAGATGCTGCTAATTCTGTTGGTGGCTGCATATGGCCTCCTAGATCATACTCTTGTAGCTTTTGCAGAAGAGAGTTTAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCTAGCCCCCACAGTGAAATTCTATGTCATGACCTTGAAACTCAACTCCATAAGCCAGTTCAAAGTCCTTTTGCTTCTTTGGATGGTTACCTATACCCTTCTCCAGTTTGTGGATTGGCTTATAAAAAAACTAACCCTAATTCTTATCCTGATTTTGTTGCTTCACCTTCTTCACCCTCACATTCCAAGGCCTTATTGGCTCCACCAGTTAATAGTGGTAACTCCAGGGAGGAAACCATGATTCCCCTTTATGATTCCCCTATTCTCCACAAGATTTCTCCTCTCAGTAATTCTTCCGAATCATGGCCAAATTTAGCTGAAGATCATAGATTATATTCATGTAAGTTCCATCCTCAAGCTGATACGAAGAAACCCTCCAAGGGAATAATGGATTCTAGATGTAGGGGTAATAAGGGGGACAATGATGATACTGATGGGGATATAAGCTTGAATTCAGTTGTGTATAGAACTCACCCATCTTTGCAGTTTGAGAGTACTAAAGAGGCAGATCATATCAGTTGCAAGAAGAGGAAAACAGATGCTTTCTCATCGCCATTTTCCCCAAAGTCAAGCTCAGTTGATAGACATCATGTGCAGCCAAAGATGTTTGAATTTAGCCCTAGCTCACTGGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACGGTTCCAAGGTATAG 936 0.4252 MEQGQCWTKRKYSLSSSLSSPTNPSYGESWEEQAFAEDAANSVGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHSEILCHDLETQLHKPVQSPFASLDGYLYPSPVCGLAYKKTNPNSYPDFVASPSSPSHSKALLAPPVNSGNSREETMIPLYDSPILHKISPLSNSSESWPNLAEDHRLYSCKFHPQADTKKPSKGIMDSRCRGNKGDNDDTDGDISLNSVVYRTHPSLQFESTKEADHISCKKRKTDAFSSPFSPKSSSVDRHHVQPKMFEFSPSSLEELDLELRLGNGSKV* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01049 311 SUPERFAMILY beta-beta-alpha zinc fingers 50 79 IPR036236 -
Lapu10g01049 311 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Lapu10g01049 311 Pfam C2H2-type zinc finger 53 77 - -
Lapu10g01049 311 MobiDBLite consensus disorder prediction 208 233 - -
Lapu10g01049 311 MobiDBLite consensus disorder prediction 140 161 - -
Lapu10g01049 311 MobiDBLite consensus disorder prediction 208 231 - -
Lapu10g01049 311 MobiDBLite consensus disorder prediction 1 29 - -
Lapu10g01049 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Lapu10g01049 311 Gene3D Classic Zinc Finger 50 102 - -
Lapu10g01049 311 PANTHER OS07G0101800 PROTEIN 25 307 - -
Lapu10g01049 311 SMART c2h2final6 53 75 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01049 Lapu-Chr10 12325527 12326462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01049 29 307 C2H2 Transcription Factor Family AT2G37740 33.544 1.77e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu10g01049 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01049 - - gmx:100801427 540.806