Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01030 ATGGAAGGTCGCCGGAGGATAACGCTCTACGATCAAATGACAGCTGGCAACAGCAATAACAGCACCAGCAGCACCAGCCGAGACTCACTAGCGAGCCTCATGGTCGACGACGTCGTATTCAAGAAAACCGAAGCCGAGGCCAGCCGTAATCTGAGCCGAAGCCGAACCCTACAAGACATCATTCGCGAAGAGAAACCTAACGGAGACGCTAAGGATCGCAACTCTTGGAAAGCCTTCAAGGAGAAGCTTCGGCTCAAGCGCGCTATCGGCTTGGCTTGGTCCTCCGCCACTAATCACAGTAATAATAGCAATAATAATGATGGAAATTTACCTGAAACTCGCCTGGACTCGGACGACGCGGTGACTCAGCCGAACGACGTCGTCGTGGAGGACGCAAACGATTCGGATCCGCTCGGTCGGTTCGGATCTCCGACGGACAACACGGCGGCCGGAGGCGATTCCTCCGACGGGGAGAACAACCAGGAGGCGGCGGTCGGCGTGTCGTTGATGGATTTGTTGGAGGAAGCGGAGCAGGAAATGGATTTGTACAGAGTGAGCGATGATGATGTTGATGATGATGTGGTGGCAGCGTTTGAGAAGGGAAAAGAAGACGAAGCAGAAAAAGAGGGTTTGGTGGAGTACAACTGCTGCGTGTGCATGGTGCGTCATAAAGGCGCGGCGTTTATCCCCTGTGGACACACTTTCTGCAGAATGTGCTCCAGGGAGATTTGGGTGAGCAGAGGGAATTGCCCTCTCTGCAATAATTTAATTTTGGAAATTCTTGATATTTTCTGA 795 0.5258 MEGRRRITLYDQMTAGNSNNSTSSTSRDSLASLMVDDVVFKKTEAEASRNLSRSRTLQDIIREEKPNGDAKDRNSWKAFKEKLRLKRAIGLAWSSATNHSNNSNNNDGNLPETRLDSDDAVTQPNDVVVEDANDSDPLGRFGSPTDNTAAGGDSSDGENNQEAAVGVSLMDLLEEAEQEMDLYRVSDDDVDDDVVAAFEKGKEDEAEKEGLVEYNCCVCMVRHKGAAFIPCGHTFCRMCSREIWVSRGNCPLCNNLILEILDIF* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01030 264 PANTHER OS01G0917900 PROTEIN 4 264 - -
Lapu10g01030 264 MobiDBLite consensus disorder prediction 96 120 - -
Lapu10g01030 264 Pfam Zinc finger, C3HC4 type (RING finger) 214 257 - -
Lapu10g01030 264 CDD RING-HC 216 253 - -
Lapu10g01030 264 SMART ring_2 216 253 IPR001841 -
Lapu10g01030 264 MobiDBLite consensus disorder prediction 1 29 - -
Lapu10g01030 264 MobiDBLite consensus disorder prediction 96 160 - -
Lapu10g01030 264 ProSiteProfiles Zinc finger RING-type profile. 216 254 IPR001841 -
Lapu10g01030 264 SUPERFAMILY RING/U-box 215 260 - -
Lapu10g01030 264 MobiDBLite consensus disorder prediction 11 29 - -
Lapu10g01030 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 264 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01030 Lapu-Chr10 12114529 12115323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01030 4 264 C3H Transcription Factor Family AT3G25030 38.043 1.43e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01030 - - gmx:100819018 368.622