Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu10g01021 | ATGTTTGTTCCAAGAACGAATGAAAAGTTGCTTGAAAACCTTGAAGAAATGGGATTTTCAAAAGCACGGGCAACAAGAGCACTTCATTATTCTGGAAATACCAGCTTAGAGGATGCTATAACTTGGATCGTTGATCATGAGAATGACATTGATATTGATGAGATGCCATTGGTAGATGTAGACGTTGAGATAGAGTCCACCGAGTCCTTCCCCATCTCAGAAGAAATGAGAATCAAAGCACAGAGTTTAAGGGAACAAGAGCGTAAGAGGAAAGAACAGGAAGAGAAAAGATTGGAGAGAGAAAGGGAGAAGGAGAGGATTCAAGCAGGTAAGAGACTCCTCGAAGCCAAGCGAATTGCTGAAGAAAATGAAAGAATACGAAATTTATCCCTGAGAAAAGCGGAAAAAGAAGAAGAGAAAAGAGCTAGAGAGAGAGTTCTACAGAAACTAGAGCAGGATAAGTTAAATAGAAAATTTAAACAAGGATTGCCTTTAGAAGGCCAAGCAACGGTCAGATCATCTGCTATTAAAATACAACAAGAAAAGAAGTCAAATCCTGTTTATTCAATTACAAAAGCTGAGCAGTTAAGAGATTGTCTGAGGAATCTGAAGCGTAACCATCAGGTTGAGGATGCCAGAGTCAGAAGAGCCTTTCAAACACTACTAGTCTATGTTGGAAACGTTGCCAAGAATCCCAATGAAGAAAAGTACAGGAAAATACGACTGAATAACCCATTATTCCTGGATAGAGTTGGAAGTTTAAATGGAGGTGTAGAGTTTCTTGAGCTATGCGGTTTTGAGAGAACTGGTGGCTTCTTGCATCTTCCTCAAGAAAAGATTGACATGGCACTGCTGAATTCAGCTGGTTTTGTCTTAAATTCTGCAATGACAAACCCTTTCTTTGGAGTTTTAAGTACTACTCACAATTAA | 930 | 0.3914 | MFVPRTNEKLLENLEEMGFSKARATRALHYSGNTSLEDAITWIVDHENDIDIDEMPLVDVDVEIESTESFPISEEMRIKAQSLREQERKRKEQEEKRLEREREKERIQAGKRLLEAKRIAEENERIRNLSLRKAEKEEEKRARERVLQKLEQDKLNRKFKQGLPLEGQATVRSSAIKIQQEKKSNPVYSITKAEQLRDCLRNLKRNHQVEDARVRRAFQTLLVYVGNVAKNPNEEKYRKIRLNNPLFLDRVGSLNGGVEFLELCGFERTGGFLHLPQEKIDMALLNSAGFVLNSAMTNPFFGVLSTTHN* | 310 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu10g01021 | 309 | CDD | PUB_UBA_plant | 200 | 304 | - | - | |
| Lapu10g01021 | 309 | SMART | uba_6 | 7 | 45 | IPR015940 | - | |
| Lapu10g01021 | 309 | Gene3D | - | 193 | 294 | - | - | |
| Lapu10g01021 | 309 | Coils | Coil | 76 | 108 | - | - | |
| Lapu10g01021 | 309 | SUPERFAMILY | UBA-like | 5 | 57 | IPR009060 | GO:0005515 | |
| Lapu10g01021 | 309 | MobiDBLite | consensus disorder prediction | 82 | 104 | - | - | |
| Lapu10g01021 | 309 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| Lapu10g01021 | 309 | SUPERFAMILY | PUG domain-like | 193 | 300 | IPR036339 | - | |
| Lapu10g01021 | 309 | Pfam | UBA/TS-N domain | 7 | 43 | IPR015940 | - | |
| Lapu10g01021 | 309 | Pfam | PUB domain | 213 | 281 | IPR018997 | - | |
| Lapu10g01021 | 309 | Coils | Coil | 119 | 156 | - | - | |
| Lapu10g01021 | 309 | CDD | UBA_PUB_plant | 7 | 53 | - | - | |
| Lapu10g01021 | 309 | Gene3D | - | 8 | 53 | - | - | |
| Lapu10g01021 | 309 | SMART | PGNneu | 216 | 277 | - | - | |
| Lapu10g01021 | 309 | PANTHER | F13M7.16 PROTEIN | 1 | 304 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu10g01021 | Lapu-Chr10 | 12033335 | 12040909 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu10g01021 | 1 | 304 | C2H2 Transcription Factor Family | AT1G04850 | 60.390 | 1.26e-99 | 294 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu10g01021 | K24348 | - | gmx:100781260 | 489.189 |