LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu10g00992	ATGGGTATCTCCAGAGATTCTATGCACAAAAGGCGTGCCACTGGTGGCAAGAAGAAGGCCTGGAGGAAGAAGAGAAAGTACGAGCTTGGTCGCCAGCCTGCTAACACTAAGCTGTCTAGCAACAAGACAATCAGGAGGATCCGTGTTAGAGGTGGCAATGTGAAGTGGAGGGCCCTGAGATTGGATACTGGAAATTACTCCTGGGGAAGTGAAGCTGTAACCCGCAAGACTCGTATACTTGATGTGGTATACAATGCCTCAAACAACGAGCTTGTGCGTACTCAGACCCTTGTCAGAAGTGCTATTGTTCAGGTTGATGCTGCTCCATTCAAGCAGTGGTATCTTCAGCACTATGGTGTTGACATTGGTAGGAAGAAGAAGACAGCTGCCAAGAAGGATTCTGCAGAGGAGGGTGAAGCAGCTGCAGAAGAAGCCAAAAAGAGTAACCATGTGCAAAGAAAACTGGAGAAACGCCAGAAAGAGCGCAAGCTTGATGCTCACATTGAGGAACAGTTTGGTGGTGGGCGTTTGCTTGCTTGCATTTCCTCTCGACCTGGTCAATGTGGCAGAGCTGATGGCTACATTCTGGAAGGTAAAGAGTTGGAATTTTACATGAAGAAGCTCCAGAGGAAGAAGGGGAAAGGCGCTGCCTGA	654	0.4862	MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTIRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVRSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAKKDSAEEGEAAAEEAKKSNHVQRKLEKRQKERKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAA*	218

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu10g00992	217	CDD	Ribosomal_S8e_like	5	196	-	-
	Lapu10g00992	217	FunFam	40S ribosomal protein S8	32	160	-	-
	Lapu10g00992	217	Gene3D	Ribosomal protein S8e, subdomain	108	175	IPR042563	-
	Lapu10g00992	217	PANTHER	40S RIBOSOMAL PROTEIN S8	1	214	IPR001047	GO:0003735\|GO:0005840\|GO:0006412
	Lapu10g00992	217	MobiDBLite	consensus disorder prediction	11	26	-	-
	Lapu10g00992	217	NCBIfam	ribosomal protein eS8	1	198	IPR001047	GO:0003735\|GO:0005840\|GO:0006412
	Lapu10g00992	217	Gene3D	-	26	212	-	-
	Lapu10g00992	217	Pfam	Ribosomal protein S8e	5	196	IPR022309	-
	Lapu10g00992	217	FunFam	40S ribosomal protein S8	161	214	-	-
	Lapu10g00992	217	ProSitePatterns	Ribosomal protein S8e signature.	11	30	IPR018283	GO:0003735\|GO:0005840\|GO:0006412
	Lapu10g00992	217	MobiDBLite	consensus disorder prediction	133	162	-	-
	Lapu10g00992	217	FunFam	40S ribosomal protein S8	109	175	-	-
	Lapu10g00992	217	MobiDBLite	consensus disorder prediction	1	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu10g00992	Lapu-Chr10	11612805	11616181	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu10g00992	1	205	Cytoplasmic Ribosomal Protein Gene Family	AT5G59240	84.951	4.44e-127	355

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu10g00992	K02995		-	gmx:100794937	383.645