Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00990 ATGGAAAATCAGTTCTTTCTGAATGATGGGGTGTCACAGACACAGCATCCCCTTCACTTTGAACCTTCTTCACTGCCCTCTTGGCAATCAGTCTCGCCCACAATGGGAATTCAACCAACAGTTGTGAATTGCGCCTCTGAGCCGACCCAGGATTGCTTTTACAACCCCAATTGGGACAAGTCAACAGATCATGGACTTCACTTTGATTCCTCAGCACTGAGTTCAATGGTCTCATCTCCTGCGGGATCATCCAACCCCAACAACAACAGCAACATGTCCAATGAGAATTTCATCATCAGGGAATTGGTGGGGAGATTGGGAGCTATTGGGAGGTCTGATGAGATCCAACAACAATCTCCTCACCCTTTGGTTGCGGTCTCTTCTTACATGAATAATGGCAGTAACAGCCCCAACACTTCATGTTACACCACCCCTTTGAGTTCCCCTCCGAAGGTGAAGACTGTTCAGAGTTTGGTGAATGAGAGATTGGCAAATTTGGGAGGAAAGTCAATGACTTTGAATTCCAGTGTGGCTGAATTCTCAGCTGACCCTGGCTTCGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGCAGCAGGAGTTTCAATGGTAGGAATGTCCAATTGGGGGTGAACAGTGGTGAATTGGCTCAAAGATCTACACCAGTGGTCGAAAATGGTGGAAAATTATCTAGAATCTCAAGTAGTCCTTTGCTTAAGACACTTGGATCTCAAATGGGTACTCAGGAGAACAAGAATTCAGCAATTCAGGACCAGGAGAAAATGGAAATGACCAATTCTCAAGAGGAATCTACAATATCTGAGCAAACACCAAATGGAGAAATTGGGATGAAAATTTGCCAAGATATGACGAATTTCAGGAAAAGAAAAGCATCTTCGAAAGGAAAAAACAGAGAAACTTCGAACTCTATTAATCCCACCAAGGGTGTTGAAGTTAGTGAGGATTCAAATTCAAAGCGTACCAAGCCAAATGAGGGTGAGGGAAATGAAAATGGGCCAGTGAAGGTTGAGGAAGAGTCCAAAGCAGTGGAAGAGAAACAGAACAAAAGCAACTCAAAACCTCCTGAGCCACCAAAAGATTACATTCATGTGAGAGCAAGAAGAGGCCAAGCCACTGACAGCCATAGTCTTGCAGAACGTGTACGGAGGGAGAAAATCAGTGAGAGGATGAAGCTGCTCCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGCAAAGCACTTATGCTGGATGAAATTATAAATTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTTCTGTCTATGAAGTTGGCTTCTGTTAACACTAGGATGGATCTTAGTGTTGAGAATCTTGTTTCAAAAGATGTTTTTCAATCTAATAATTCTTTGGCAACACACCCAAATCCAATATTCCCACTAGATTCCTCAGCACAACCCTTTTATGGGCACCAGCCTCAGCAAAACCCAGTTATCCATAATAACAACATACCTAACAGAACGGTGACCCACTGCTCAGTGGACCCATTAGATACATCTTTGTGCCAAAATCTTGCCATGCAATTACCTCCCCTAAATGGGTTTAATGAAGCTGGCTCTCAGTTTCCATTGACATTCTGTGAGGATGATCTCCACAGCATTGTGCAGATGGGGTTTGCGCAAACTGCAAACTGGAAAACACCAATTCAATCCCCAAGTTTCAACGGTTCAAATAATGTACCCCAGATGAAAGTTGAACTCTGA 1740 0.4362 MENQFFLNDGVSQTQHPLHFEPSSLPSWQSVSPTMGIQPTVVNCASEPTQDCFYNPNWDKSTDHGLHFDSSALSSMVSSPAGSSNPNNNSNMSNENFIIRELVGRLGAIGRSDEIQQQSPHPLVAVSSYMNNGSNSPNTSCYTTPLSSPPKVKTVQSLVNERLANLGGKSMTLNSSVAEFSADPGFAERAAKFSCFGSRSFNGRNVQLGVNSGELAQRSTPVVENGGKLSRISSSPLLKTLGSQMGTQENKNSAIQDQEKMEMTNSQEESTISEQTPNGEIGMKICQDMTNFRKRKASSKGKNRETSNSINPTKGVEVSEDSNSKRTKPNEGEGNENGPVKVEEESKAVEEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSVENLVSKDVFQSNNSLATHPNPIFPLDSSAQPFYGHQPQQNPVIHNNNIPNRTVTHCSVDPLDTSLCQNLAMQLPPLNGFNEAGSQFPLTFCEDDLHSIVQMGFAQTANWKTPIQSPSFNGSNNVPQMKVEL* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00990 579 FunFam Basic helix-loop-helix transcription factor 373 445 - -
Lapu10g00990 579 MobiDBLite consensus disorder prediction 319 367 - -
Lapu10g00990 579 Coils Coil 423 443 - -
Lapu10g00990 579 Pfam Helix-loop-helix DNA-binding domain 380 427 IPR011598 GO:0046983
Lapu10g00990 579 MobiDBLite consensus disorder prediction 240 280 - -
Lapu10g00990 579 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 376 426 IPR011598 GO:0046983
Lapu10g00990 579 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 256 480 IPR024097 GO:0006355
Lapu10g00990 579 Gene3D - 373 449 IPR036638 GO:0046983
Lapu10g00990 579 MobiDBLite consensus disorder prediction 74 93 - -
Lapu10g00990 579 SMART finulus 382 432 IPR011598 GO:0046983
Lapu10g00990 579 MobiDBLite consensus disorder prediction 303 318 - -
Lapu10g00990 579 MobiDBLite consensus disorder prediction 240 281 - -
Lapu10g00990 579 MobiDBLite consensus disorder prediction 293 367 - -
Lapu10g00990 579 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 374 445 IPR036638 GO:0046983
Lapu10g00990 579 CDD bHLH_AtBPE_like 366 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00990 Lapu-Chr10 11579389 11583390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00990 1 538 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 41.606 7.70e-103 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu10g00990 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00990 - - gmx:100801233 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00320 6 3005206 3008251 Lapu10g00990 10 11579389 11583390 PCT