LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu10g00981	ATGGGATTCGAGTATTCTTCCGAATACGATGTGTTCATAAATTTTAGGGGAAAAGACACCCGCATGAATTTCGTTTCTCATCTCTATGCTGCTCTCTCAAATGCCGGAGTCAACACTTTCCTTGACGAAGCCGATTTTCCCAGGGGAGTGGAGCTTAAAGATGGACTATTAGGAACGATTGAAAGGTCTCAGATATGTGTAGTTGTTTTCTCCAGATACTACACTGAATCTTCTTGGTGTCTTAACGAGTTGGAAAATATCATTAAATGCCACCAAACTCATGGCCACATAGTTTTCCCTATTTTTTACCATGTTGATCCATCCCAAGTTCGTCACCAAATTGGTGATTTTGGAAATACTTTGAAAGCATTAGCAGGAACAAGAGGGTGGGGAGAATCTGTGATGTCCAGGTGGAAAAACGCACTCACCGCAGCTACAAATTTTTCTGGTTGGCATGTGAGTAAGATCAGGAACCAGGCTGAATTAGTGAACAAAATTGTTGAGGAGGTTATCAGAAAACTAGACAAGGCATCCATGTCTATTACTGAATTTCCTGTTGGCTTAGAACCCCGTGTGCAAGAAGTGATTGGATTCATCAAAAGCCAAGTCTACACATGCATCATAGGCTTATGGGGAATGGGAGGGTTGGGTAAAACTACCACAGCCAAAGCCATCTACAATCGAATTCATCGTAAATTCACGGATAAATGTTTCATTGAAGATATTCGAGAAGTTTGTGAAACAGATCGTAGAGGGCATGTTCATTTGCAAGAACAACTTCTTTCGGGCATCCTCAAAGGAAAGGTGAACGTGACAAGCGTTGGGATGGGAAGGGACATGTTGGAGAACAAACTTTCTGGAAGAAAGGCACTCATTGTTCTTGATGATGTTAATGAGTTTGGCCAATTAAAAGACCTATGTGGAAATCGTAAATGGTTCGGTCAAGGAAGTATAATAATCATCACAACTAGAGATGTACGCCTTCTGAAGAGACTTAAAGTTGATTATGTGTATAAGATAGAAGAAATGAACGAAAATGAGTCCCTTGAGCTTTTTAGTTGGCATGCTTTTAGAGAAGAAAAACCAATGCAAGACTTCAGTGAAGTTGCAAGAAGTGTAGTTGCTTATTGTGGAGGACTACCTCTGGCTCTGGAGGTTCTTGGTTCTTATTTAAGTGAGAGGACAAAGAAGGAGTGGAAAAGTGTGTTGTCAAAACTAAAAATAATTCCTAATAATCAAGTTCAAGAGAAACTGAGAATAAGTTTTGATGGTTTACGCGATCAGATGGAAAAGGATATATTTCTTGATGTGTGTTGTTTCTTTATAGGTAAAGACAGAGACTATGTTACAGAGATACTAAATGGCTGTGGACTACATGCTGATATTGGAATAACAGTTCTCATAGAACGTAGCCTCATAAAAGTTGAAAAGAGCAACAAACTCGGAATGCATGATTTGCTAAGAGACATGGGACGAGAGATTATTCGGGAAAAATCAACAAAGAAACCAGGGAAGCGCAGTCGACTGTGGTTTCATGAGGATGTAGTTGAAGTATTGACAAAGAATACTGGGACAGAAGCTATTGAGGGGTTGACTCTGAAATTACAGTTAAGTAGCAGAGGTTGCTTCAATACTTCTGTTTTTAAGAAAATGCAGAGATTGAGATTATTGCAACTTGATCATGTAACACTCAATGAAGATTATAGGTATCTTCCTAAGCAGCTGAGATGGATCTACTGGAAAAGATTTCCTTTAAAATACATACCTAACAACTTTTATTTGGGAAGAGTAATTGCGATTGATTTAAGGCACAGTAATCTAAGACTGATCTGCAAAGAACCCCAGGTTTTTCCTTGGGTGAAATTCCTCAATCTTAGTCATTCCAAGTACTTGATAGAAACCCCTGACTTTTCAAAACTACCAACTCTTGAAAAACTCATACTCAAAGATTGTCCAAGTTTGTACAAGGTACACCAGTCCATTGGGAATCTCCAAAATCTTCAATTGATAGATTTGAAGGAGTGTACAAGCCTTAGCAGTCTCCCCAGAGAAACATATAAGTTGAAATCTTTGAAAACTCTCATCCTATCTGGTTGTTCGAAGATTGACAAATTGGAAGAAGATATAGTACAGATGGAATCCTTGAGAACTCTACTTGCTAAAAATACTGCAGTGAAACAAGTTCCCTTTTCAATAGTAAGATCAAAAAGCATTGGATATATATCTCTATGTGGATTTGAAGGATTATCACGTAATGTTTTTCCTTCT	2268	0.3845	MGFEYSSEYDVFINFRGKDTRMNFVSHLYAALSNAGVNTFLDEADFPRGVELKDGLLGTIERSQICVVVFSRYYTESSWCLNELENIIKCHQTHGHIVFPIFYHVDPSQVRHQIGDFGNTLKALAGTRGWGESVMSRWKNALTAATNFSGWHVSKIRNQAELVNKIVEEVIRKLDKASMSITEFPVGLEPRVQEVIGFIKSQVYTCIIGLWGMGGLGKTTTAKAIYNRIHRKFTDKCFIEDIREVCETDRRGHVHLQEQLLSGILKGKVNVTSVGMGRDMLENKLSGRKALIVLDDVNEFGQLKDLCGNRKWFGQGSIIIITTRDVRLLKRLKVDYVYKIEEMNENESLELFSWHAFREEKPMQDFSEVARSVVAYCGGLPLALEVLGSYLSERTKKEWKSVLSKLKIIPNNQVQEKLRISFDGLRDQMEKDIFLDVCCFFIGKDRDYVTEILNGCGLHADIGITVLIERSLIKVEKSNKLGMHDLLRDMGREIIREKSTKKPGKRSRLWFHEDVVEVLTKNTGTEAIEGLTLKLQLSSRGCFNTSVFKKMQRLRLLQLDHVTLNEDYRYLPKQLRWIYWKRFPLKYIPNNFYLGRVIAIDLRHSNLRLICKEPQVFPWVKFLNLSHSKYLIETPDFSKLPTLEKLILKDCPSLYKVHQSIGNLQNLQLIDLKECTSLSSLPRETYKLKSLKTLILSGCSKIDKLEEDIVQMESLRTLLAKNTAVKQVPFSIVRSKSIGYISLCGFEGLSRNVFPS	756

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu10g00981	756	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	9	715	IPR044974	GO:0006952
	Lapu10g00981	756	Gene3D	-	6	170	IPR035897	-
	Lapu10g00981	756	Gene3D	Ribonuclease Inhibitor	536	755	IPR032675	-
	Lapu10g00981	756	ProSiteProfiles	TIR domain profile.	7	174	IPR000157	GO:0007165
	Lapu10g00981	756	FunFam	Disease resistance protein (TIR-NBS-LRR class)	5	176	-	-
	Lapu10g00981	756	Pfam	NB-ARC domain	192	407	IPR002182	GO:0043531
	Lapu10g00981	756	SUPERFAMILY	"Winged helix" DNA-binding domain	413	519	IPR036390	-
	Lapu10g00981	756	SMART	till_3	8	148	IPR000157	GO:0007165
	Lapu10g00981	756	Coils	Coil	702	722	-	-
	Lapu10g00981	756	Gene3D	-	171	338	IPR027417	-
	Lapu10g00981	756	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	179	436	IPR027417	-
	Lapu10g00981	756	Pfam	TIR domain	9	182	IPR000157	GO:0007165
	Lapu10g00981	756	PRINTS	Disease resistance protein signature	207	222	-	-
	Lapu10g00981	756	PRINTS	Disease resistance protein signature	662	678	-	-
	Lapu10g00981	756	PRINTS	Disease resistance protein signature	377	391	-	-
	Lapu10g00981	756	PRINTS	Disease resistance protein signature	284	298	-	-
	Lapu10g00981	756	Gene3D	-	342	426	IPR042197	-
	Lapu10g00981	756	SUPERFAMILY	L domain-like	533	746	-	-
	Lapu10g00981	756	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	151	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu10g00981	Lapu-Chr10	11488106	11491467	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu10g00981	3	732	WRKY Transcription Factor Family	AT4G12020	28.684	1.46e-85	295

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu10g00981	-		-	vun:114165127	1328.15