LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu10g00975	ATGGAGTTTGCATCTTCTTCGTCGTTCTCAAAATCGAAACACCAGCGGATACACGACGTGTTCATCAACTTCAGGGGAGAGGACACCCGCAGGAAGTTCGTTTCCCATCTCCACTATGCCCTCTCCAATGCTGGTGTCAACACTTTCTTTGATGAGAACAATCTTGACAAGGGAATGCAGCTTCAGGATCTCATGCGAGCAGTAGAAGGCTCTCAGATAGCGATTGTTGTTTTCTCCCAAACCTACACTGAATCAACTTGGTGTCTCGATGAGCTTGAACAAATCATCAAATGCAATCAAACTCAAGGCCAAAGTGTTCTCCCTGTCTTCTACGAGATTGACCCTTCTGATGTACGTCATCAGAAGGGTGATTTTGGAAAAGCGTTGGAAGAAGCTGCACGGAGAAGCTATTCAGGAGAACAAGTGGAGCATGCCTTGTCCAGGTGGAGCGGTGCGCTCAACAAAGCTGCAGGTATCAGTGGTTGGGATGTCAGAAATTTCAGGAATGAAGCTGAACTAGTTAAACAAATTGTTAACCGCGTTCAGACATTACTGGACTATGAAGTCTTGTCTATTACAGAATTTCCTGTTGGACTAGAATCCCGTGTGCAAGAAGTGATTGGACTCATTGAAAATCGTTCCTCCCAAGTCTGTATGATAGGGATTTGGGGTATGGGGGGATCTGGGAAAACTACCATTGCCAAAGCTATCTATAATCGGATTCATCGTAGATTCATGGATAAAAGTTTCATTGAGAATATCAGAGAAACTTGTGAAATGCATGGTAGAGGGTATGTTCCTTTGCAAGAACAGCTTCTTTCAAATGTTCTAAAAACAAAGGTGGAGATACATAGCGTTGGGATGGGAACGACTATGATCGAGAACAGACTTGCTGGAAAAAGGGCACTCATTGTACTTGATGATGTGGATGAGTATAGCCAATTAAAAGCTGTGTGTGGAAATCGTAAATGGATTGGTAAAGGAAGTGTAATAATCGTTACAACTAGAGATGTTGGCCTCCTTACTAGACTTGAAGTTGATTATGTTTATGAGATGGATAAAATGGATGAAAACGAGTCCCTTCAGCTTTTCAGTTGTCATTGTTTTGGAGATGCAAAACCAAGAGAAGGCTTCAGTGCACTTGCAGTAAGTGTTGTTGCATATTGTGGAGGACTACCTCTGGCTCTTGAAGTGCTTGGTTCTTATTTATTTGACAAGACGTCAAAGAAAGTTTGGGAAGGTGTATTGTCGGTACTAGAAAAAATTCCCAATGATCAGGTTCAACAGAAATTAAGAATAAGCTTTGATAGTTTAAGCAATGGCATGCAGAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGACAGAGGTTATGTCACAGAGGTACTAAATGGTTGTGGACTTTGTGCTGATGCTGGAATACCAGTTCTCATAGAACGTAGCCTCATAAAGGTAGAAAAGAACAACAAACTTGGAATGCATCCTTTGCTACAAGAAATGGGAAGAGAGATAATTCGTGAAAACTCAAGAAAGGAACCTGGGAAGCACAGTCGATTGTGGTTTCAAAAGGATGTAGTTGAAGTATTGACAAAGAATGCTGGTACAGAAGCTATTGAGGGATTGGTCCTGAAATTGCATTTAACCAGCAGAGATTGTTTCAAAGCCGATTCTTTCCAGAAAATGGAGAAATTGAGACTGTTGCAACTCGATCATGTACAGCTTGCTGGAAATTATGGGTACATTTCTAAGGAACTGAGATGGATCTCTTGGCAAGGCTTTCCTTCAAATTGCCTGCCAAAAAACTTTTATATGGATGATGTAATTGCGATTGATTTAAAACACAGTCATCTTCGATTCGTCTGGAACCAACCCCAGGTTTTGAGGTGGCTAAAGGTCCTTAATCTTAGTCACTCCAAGTACTTGACAGAAACCCCTGACTTTTCAAAATTACCAAGTCTTGAACAGCTCATTCTCAAAGATTGTCCAAGTTTGCGCGAGGTACACAAATCCATTGGAGATCTCTGTAATATTGTATTGATAAATTTGAAGGATTGTACAAGCCTAAGCAATCTCCCCAGAGAGATATATAGGTTGAAATCTTTGAAAACATTCATCCTATCAGGTTGTTCAAAGATTGACAAATTGGAAGAAGATATAGCACAGATGGAATCCTTGAGAACTCTAATTGCTGAAAATACTGCTGTGAAAAAAGTCCCGTTTTCAATAGTAAAGTCAAAAAGCATTGGATATATATCCTTATGTGGATTTGAAGGACTGGCACGAAATGTTTTTCCTTCTATCATCCAGTCTTGGGTGTCACCAACAATGAATCCCCTCTTTTATATTCGTCCATTTAGTGGCACATCATGTTCTCTGGTTTCCATGGAGACACAGAATAATATTTTGGGTGAACTTGCACCAATGCTCAGAAGCCTTTCAAATGTTCGATGTGTTTTGGTGAAATTTGAGACAGAGATTCAACTATCTAAATATATAAAAACATTTCTGGTTGAAGATGTTGTAAATTTTACAGAATTAGGAACTTCAAAGCATCACTTGAGGTCTTCCTCGATTGGAATTGGAAGTTACGAAGGGTTTTTAGATGTTATCTGCAATAAAATATCTGAGAGATTGGCAACCAATGAGGGTTGTGAAGTTTTACTCCCAGGTGACAATAAGCCTCATTGGTTTGCCCATATAGGTGAGGGGAATTCAGTGTATTTCTCTGTGCCTGAGGACTGGGAGATGAAGGGAATGGCTCTGTGTATTTTTTATTTATCAAACCCCGAAATCATGGAAACCGAATGTCTTACTAGTGTTTTAATTGCTAATTATACGAAGTGCACTCTGCTGATACACAGGCAAGACACAGTGATTTCCTTTAATGATGAAGATTGGCAGAAGGTAATATCAAATTTGGGAGGTGGAGACAAGGTGGAGATTTTTGTGACTTTTGGTCATGGATTGGTGGTAAAAAAAACAGCTCTCTATCTTATGTATGGTGAATCAAATGATGTAGAAATTGAGCCGACACCTTGTGAATCGAATGATATAGAAATTGAGCCGAGGCATTCTGAATCAAATGATATAGAAATTGAGCAGATGCATTGTGAATCAAATGTATTGGAAATGAAGTCTGATCCTAAACCAAATGGGAATGCCTTCACCAGATTGTTAAAGAAATTTGCAATGTGTGACTTCTAG	3213	0.3956	MEFASSSSFSKSKHQRIHDVFINFRGEDTRRKFVSHLHYALSNAGVNTFFDENNLDKGMQLQDLMRAVEGSQIAIVVFSQTYTESTWCLDELEQIIKCNQTQGQSVLPVFYEIDPSDVRHQKGDFGKALEEAARRSYSGEQVEHALSRWSGALNKAAGISGWDVRNFRNEAELVKQIVNRVQTLLDYEVLSITEFPVGLESRVQEVIGLIENRSSQVCMIGIWGMGGSGKTTIAKAIYNRIHRRFMDKSFIENIRETCEMHGRGYVPLQEQLLSNVLKTKVEIHSVGMGTTMIENRLAGKRALIVLDDVDEYSQLKAVCGNRKWIGKGSVIIVTTRDVGLLTRLEVDYVYEMDKMDENESLQLFSCHCFGDAKPREGFSALAVSVVAYCGGLPLALEVLGSYLFDKTSKKVWEGVLSVLEKIPNDQVQQKLRISFDSLSNGMQKDIFLDVCCFFIGKDRGYVTEVLNGCGLCADAGIPVLIERSLIKVEKNNKLGMHPLLQEMGREIIRENSRKEPGKHSRLWFQKDVVEVLTKNAGTEAIEGLVLKLHLTSRDCFKADSFQKMEKLRLLQLDHVQLAGNYGYISKELRWISWQGFPSNCLPKNFYMDDVIAIDLKHSHLRFVWNQPQVLRWLKVLNLSHSKYLTETPDFSKLPSLEQLILKDCPSLREVHKSIGDLCNIVLINLKDCTSLSNLPREIYRLKSLKTFILSGCSKIDKLEEDIAQMESLRTLIAENTAVKKVPFSIVKSKSIGYISLCGFEGLARNVFPSIIQSWVSPTMNPLFYIRPFSGTSCSLVSMETQNNILGELAPMLRSLSNVRCVLVKFETEIQLSKYIKTFLVEDVVNFTELGTSKHHLRSSSIGIGSYEGFLDVICNKISERLATNEGCEVLLPGDNKPHWFAHIGEGNSVYFSVPEDWEMKGMALCIFYLSNPEIMETECLTSVLIANYTKCTLLIHRQDTVISFNDEDWQKVISNLGGGDKVEIFVTFGHGLVVKKTALYLMYGESNDVEIEPTPCESNDIEIEPRHSESNDIEIEQMHCESNVLEMKSDPKPNGNAFTRLLKKFAMCDF*	1071

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu10g00975	1070	PRINTS	Disease resistance protein signature	389	403	-	-
	Lapu10g00975	1070	PRINTS	Disease resistance protein signature	219	234	-	-
	Lapu10g00975	1070	PRINTS	Disease resistance protein signature	296	310	-	-
	Lapu10g00975	1070	PRINTS	Disease resistance protein signature	699	715	-	-
	Lapu10g00975	1070	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	187	-	-
	Lapu10g00975	1070	Gene3D	-	354	439	IPR042197	-
	Lapu10g00975	1070	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	449	IPR027417	-
	Lapu10g00975	1070	Gene3D	Ribonuclease Inhibitor	545	858	IPR032675	-
	Lapu10g00975	1070	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	762	IPR044974	GO:0006952
	Lapu10g00975	1070	Gene3D	-	183	349	IPR027417	-
	Lapu10g00975	1070	ProSiteProfiles	TIR domain profile.	16	185	IPR000157	GO:0007165
	Lapu10g00975	1070	SUPERFAMILY	Toll/Interleukin receptor TIR domain	11	162	IPR035897	-
	Lapu10g00975	1070	Coils	Coil	715	735	-	-
	Lapu10g00975	1070	Gene3D	-	10	182	IPR035897	-
	Lapu10g00975	1070	Pfam	TIR domain	18	181	IPR000157	GO:0007165
	Lapu10g00975	1070	SMART	till_3	17	159	IPR000157	GO:0007165
	Lapu10g00975	1070	SUPERFAMILY	L domain-like	546	842	-	-
	Lapu10g00975	1070	SUPERFAMILY	"Winged helix" DNA-binding domain	426	532	IPR036390	-
	Lapu10g00975	1070	Pfam	NB-ARC domain	202	438	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu10g00975	Lapu-Chr10	11459052	11463511	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu10g00975	9	745	WRKY Transcription Factor Family	AT4G12020	28.986	1.56e-78	281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu10g00975	-		-	vun:114167037	1652.11