Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00972 AACGCAAACAAGTCCCTTGAACTTTTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAAGAATACATTGACCTTGCAAAAGCAATAGTTACTTATTGTGGAGGACTACCTCTAGCTCTTGAAGTCATTGGAAGTTGTTTATTTGAAAGGACGAAAGAAGAATGGAATAGTGTATTGTTAAAATTAAAGAAAATTCCGCGTCACGATCTTCAACAGAAATTGAAAATAAGCTTCGACGGTCTACGCAATCAAATGGAAAAAGATTTATTCCTTGATGTATATTGTTTCTTTGTTGGTAAGGGCCGAACCTATGTTACAAAGATTCTAAATGGCTGTGGAGTAGACGCTGATAGTGGAATAAGAATTCTCATAGAGCATAGCCTCATAAAAGTTAAAAAGAACAACAAATTTGGGATGCATCCTTTGCTACAAGAAATGGGAAGAGAAATTATTCGTGAAATTTCAAGAATGGAACCTGGGAAGAACAGTCGACTGTGGTTTGATAACGATGCAGAATATGTACTGTCAGAGAATCCTCTCTTTTCATCACAGGGGACAAAAGTCATTCAGAGATTGCCTGTGAAACAGTTTAAAACCATAAGAGATTGCTCGGAACCTTATCCTTTTAAGGTAAGAAACAGATCAAGACTGCTGAAAGTCGCTGGAAATTATGAGTACCTTTCTAAGAAACTGAGATGGATCAGTTTGCAAGGGTTTTCTTCACCATACCTACCTAACGACTTTAATCTGCAAGGTGCAATAGCGATTGATTTAAAACACAGTCTTCTTCAACTCGTCTGGAAAGAACCCCAGGTTTTGGCGTGGCTAAAAGTCCTTAATCTTAGTCACTCCATGTACTTGACAGAAACCCCTGACTTTTCGGCACTACCAAGTCTTGAACAGCTCATTCTCAAAGATTGTCCAAGATTGTGCGAATTACACCAATCTATTGGATGTCTCTGCAATCTTATACTGCTAAATTTGAAGGACTGTACTAGTCTTAGCAATCTCCCCACAGAGATATACAGGTTGAAATGTTTAAAAACTCTCATTCTCTCTGGTTGTTCGATGATTTACCTATTGGAAGAAGATATAGTACAAATGGAATCCCTGATAACTCTAATTACTGAAAATACAGTTGTCAAACAAGTGCCTTTTTCAATTGCAAGCTCAAAAAGCATTGGATATGTATCCCTACCTGGATTTGAGGGATTGTCACATCATCTTTTTCCCTCTATCATTGTCTCGGATGTCGCCAACAATGAATCCCCTATCTTATATCCCTTCGTTTTTCATGGATATGGAAGTTAA 1314 0.3775 NANKSLELFSWHAFREAKPKEEYIDLAKAIVTYCGGLPLALEVIGSCLFERTKEEWNSVLLKLKKIPRHDLQQKLKISFDGLRNQMEKDLFLDVYCFFVGKGRTYVTKILNGCGVDADSGIRILIEHSLIKVKKNNKFGMHPLLQEMGREIIREISRMEPGKNSRLWFDNDAEYVLSENPLFSSQGTKVIQRLPVKQFKTIRDCSEPYPFKVRNRSRLLKVAGNYEYLSKKLRWISLQGFSSPYLPNDFNLQGAIAIDLKHSLLQLVWKEPQVLAWLKVLNLSHSMYLTETPDFSALPSLEQLILKDCPRLCELHQSIGCLCNLILLNLKDCTSLSNLPTEIYRLKCLKTLILSGCSMIYLLEEDIVQMESLITLITENTVVKQVPFSIASSKSIGYVSLPGFEGLSHHLFPSIIVSDVANNESPILYPFVFHGYGS* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00972 437 Gene3D - 1 83 IPR042197 -
Lapu10g00972 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 93 IPR027417 -
Lapu10g00972 437 SUPERFAMILY L domain-like 223 407 - -
Lapu10g00972 437 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 371 IPR044974 GO:0006952
Lapu10g00972 437 PRINTS Disease resistance protein signature 343 359 - -
Lapu10g00972 437 PRINTS Disease resistance protein signature 34 48 - -
Lapu10g00972 437 Gene3D Ribonuclease Inhibitor 203 423 IPR032675 -
Lapu10g00972 437 SUPERFAMILY "Winged helix" DNA-binding domain 72 173 IPR036390 -
Lapu10g00972 437 Pfam NB-ARC domain 3 71 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00972 Lapu-Chr10 11444990 11447818 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00972 232 400 WRKY Transcription Factor Family AT5G45050 31.250 1.29e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00972 - - pvu:PHAVU_010G029600g 566.229