Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00970 ATGGCCTCAACACTTCCTTCCATTGAATTCGCTTCTTCATCATCCCAACTCCCGCGCATGTACGATGTGCTCATCAACTTCACTGGAGACGACATCCGTAAGAAATTTGTTTCTCATCTCGATTCTGCCCTCTCATCTGTTGGGTTCTCCACTTTCCTTCACGAGGAGAATGCAGTAAAGGAAATGCACATCCAACAACCTATTCCCAATCTTTGTCGGATAGCAATTCTTGTTTTCACCAAAACCTATTCTCAATCTGCTTGGTGTCTTCATCAACTTCAACAAATCATTAAATGGCACCAAACTTATTCCCGACATGTTCTGCCCGTATATTACGAAATTGAACCATCTGATGTACGTCTTCAGAAGGGTGATTTTGGAAAAGCCTTCAAAGCAACTGCACAACAAACATTTTCTAGAGAACAACTGCAGCATGGCATGTCTAGGTGGAGCCACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGACCGTCCTTAATTTATCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTACAATCCCACGTGGAAAATCTGATTGGAACTATCAAAAGTAGATCCACGAAAGTTTGTACGATAGGGATATATGGAATGGGAGGATCTGGTAAAACCACCCTCGCCAAAGCCATCTACTATCAAATTCACGGTACATTCACGGAGAAATGTTTCATTGAAGATATTGCACAAGTTACTGAAACAAGAGGGCGTATTCATTTACAAGAACAACTTCTTTCAGATGTTCTAAAAACAAAGGCGGAGATACCTAGCATTCACGTGGGAAGAAAAATGATTCGGGAAAGACTTTATGGGAAAAGGGTGCTCATTGTACTTGACGATGTGAATGAGTATGGTCTATTAGACCTATGGGAAAGTAGTACATGGTTCGGTGAAGGAACTGTAATGATCATTACAACAAGAGATAAAAACCTGCTGAGTAAGCGTGAAGTTGATTCTTTTTTTCCGATACATGTAATGAACGCAAACCAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAGAAAGAATACAATGAGCTTGCAAAAACAGTAGCTGCTCGTTGTGGAGGACTACCTCTAGCTCTTGAAGTCATTGGAACTTATTTATATGAAAGGACGGAAGAAGAATGGAATAAAGTATTGTTAAAATTAGCGAAAATTGCCCGATATGAAGTTCAAGAGATACTGAAAATAAGCTTCGACGGTTTAAATAATCAAATGGAAAAGGATTTATTCCTTGATGTATGTTGTTTCTTTGTTGGTAAGGGAAGAACTTATGTTACGAAGATCCTAAATGGCTGTGGAGTAGACGCTGATAGTGGAATAAGAGTTCTCATAGCACGTAGCCTCATTATAGTTAAAAAGAACAACAAATTTGGAATTCATTCTATGCTACGAGAAATGGCAATAGAAATTTTTCGTGAAATTTCAAGAAACGAACCTGGGAAGAAAAGTAAAATGTGGTTTGAAGAGGATAGGGAATATACTCTGTCAGAGAATACTGTAAGAACATTCTTTATCTATGGTTTTGAAACTTCTTTTGGAAGTGCTTGCTTTCTCATGTGCAATAGATTTGTTTTTTAG 1671 0.3878 MASTLPSIEFASSSSQLPRMYDVLINFTGDDIRKKFVSHLDSALSSVGFSTFLHEENAVKEMHIQQPIPNLCRIAILVFTKTYSQSAWCLHQLQQIIKWHQTYSRHVLPVYYEIEPSDVRLQKGDFGKAFKATAQQTFSREQLQHGMSRWSHALTKAANFFGWDESNYRSDAELVDKIVKTVLNLSVLSATKFPVGLQSHVENLIGTIKSRSTKVCTIGIYGMGGSGKTTLAKAIYYQIHGTFTEKCFIEDIAQVTETRGRIHLQEQLLSDVLKTKAEIPSIHVGRKMIRERLYGKRVLIVLDDVNEYGLLDLWESSTWFGEGTVMIITTRDKNLLSKREVDSFFPIHVMNANQSLELLSWHAFREAKPKKEYNELAKTVAARCGGLPLALEVIGTYLYERTEEEWNKVLLKLAKIARYEVQEILKISFDGLNNQMEKDLFLDVCCFFVGKGRTYVTKILNGCGVDADSGIRVLIARSLIIVKKNNKFGIHSMLREMAIEIFREISRNEPGKKSKMWFEEDREYTLSENTVRTFFIYGFETSFGSACFLMCNRFVF* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00970 556 Pfam TIR domain 21 183 IPR000157 GO:0007165
Lapu10g00970 556 Gene3D - 182 343 IPR027417 -
Lapu10g00970 556 PRINTS Disease resistance protein signature 384 398 - -
Lapu10g00970 556 PRINTS Disease resistance protein signature 292 306 - -
Lapu10g00970 556 PRINTS Disease resistance protein signature 217 232 - -
Lapu10g00970 556 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 524 IPR044974 GO:0006952
Lapu10g00970 556 SUPERFAMILY "Winged helix" DNA-binding domain 420 521 IPR036390 -
Lapu10g00970 556 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Lapu10g00970 556 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Lapu10g00970 556 Gene3D - 349 433 IPR042197 -
Lapu10g00970 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 443 IPR027417 -
Lapu10g00970 556 Pfam NB-ARC domain 198 423 IPR002182 GO:0043531
Lapu10g00970 556 SMART till_3 20 160 IPR000157 GO:0007165
Lapu10g00970 556 Gene3D - 14 181 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00970 Lapu-Chr10 11437804 11442629 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00970 6 549 WRKY Transcription Factor Family AT4G12020 27.455 1.74e-55 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00970 - - pvu:PHAVU_010G029000g 760.37