Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00943 ATGACTTCCCCTTTGCTTCTCTTTCTCATCCTCTCAATGATTCTTCTACCCTTTCAACTCATCAGTGTTGTAGCCCAAACCCAAAACAACTTAGCTATTGGTGATTCTCATAGTGCAGGAAAAAGCACAACCCCATGGTTGGTTTCATCACCTTCTGGTGACTTTGCCTTTGGTTTCCTCCCACTTGAGGACTCTCCTGATCACTTCATACTTTGCATTTGGTATGCCAAGATTCAAAACAGAACCATAGTTTGGTTTGCCAATAGGGAAAATCCTGCACCAAAGGACTCAAAGGTGGAGCTTACTGCTGATGATGGGTTGGTGCTCACTGCCCCAAATGGTGACCAGTTATGGAAAACTGGAACCAGTGCTAGAGTTTCTAGGGGTGTGTTTAATGACACTGGCAACTTTGTGCTTCAGGATGATGACTTCAACAGTGCTTGGGAGAGTTTCAAGGATTATAGAAACACCTTGCTGCCCTATCAGACTCTGGAAAGGGGTCAAAAGCTATCTTCTATGCGTAGGGAGAATGATTTCAACAGGGGCAGGTTTGAGCTATTTTTCCAAAATGATGGTAATCTTGTGATGCGCTCTATAAATTTACCATCTGGGTATTCTAATGAAAACTACTATGAAAGTGGAACAATCGAATCCAACACTTCTAGTGCTGGTACTCGATTGGTGTTTGATAGGTCAGGAGATATGTATATTTTGAGAGCAAACAATGAAAAGTATAATTTGTCAGAAGCGGGTGTTGTAGTTTCTACCACTCAATTTTACCTTAGAGCAACTCTTGATTTTTATGGGGTTTTCACACTCTATCAACATCCTAAGGGTTCTTCTGGCAGTGGAGGTTGGACTCCAGTGTGGTCTCATCCAGATAATATCTGTAAGAACTATCTTGCTGCTGCAAGTAGTGGTGTTTGTGGATATAATAGCATATGTAGTATAGGAGATGATAAGAGACCAACTTGTCAGTGTCCAAAATGGTACTCATTGGCTGATCCTAATGATCCCTATGGTAGCTGCAAACCAGATTTTGTACCAGAATGTGTTGAAGATGAACTTAGTAACAGAAAGGATCTATATGAGTTTGAGGTGTTGACAGATACTGATTGGCCTCTTTCAGATTATGAGCTTCAGAGACCCTTTAATGAAGACCAATGCAGACAATCTTGTATGGAAGATTGTATGTGTTCTGTTGCCATTTTCAGGCTAGGTGACAGCTGCTGGAAGAAGAAGTTGCCACTTTCAAATGGTAGAGTTGATGCCACACTTAATGGAGCAAAGGCCTTCATGAAAGTGAGGAAGGACAACTTCTCCTTGATTAGTCCTCCAATCATTGTGAAGAACAATAGGAATACTTTGATTATGGTTTTGTCAGTGCTTTTGGGTAGTTCTGCTTTTCTCAATCTCATATTGGTTTTGGCAATCTGCTTGAGCACTTCCTACGTTTTTCAGTACAAGAAGAGGCTTAGAAGAAGAATTGGCAAAAGTGATACTACTGTGGAAACCAACTTGCGTTGTTTCACTTATGAGGAACTTGAAGAAGCCACTGATGGCTTCGACAAAGTGCTAGGGAAGGGAGCTTTTGGCGTTGTGTATGAAGGAATCGTCAACATGGGTTCCATTACTCGTGTGGCGGTGAAAAGATTGAACACCTTTCTCTTTGAAGAGGTTCAGAAGGAATTCAAGAATGAACTGAATGTCATTGGCCTCACACACCACAAGAACTTGGTTCGTTTACTTGGATTTTGTGAGACTGAATCAGAAAGGTTACTTGTTTATGAGTACATGGGAAATGGCACTTTAGCAAGTCTTCTTTTTAATGTTGAGAAACCAAGTTGGAAACTGAGGCTAGAAATTGTATCTGGGGTTGCTAGAGGACTTCTATATTTGCATGAAGAGTGCAGCACACAGATCATCCATTGTGACATAAAGCCTCAGAACATACTCCTTGATGATTACTATGTTGCAAGAATTTCAGACTTTGGTTTGGCCAAGCTTTTGAAGATGAACCAGAGCAGAACCAACACTGCAATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTCAAAAACATGCCAATCACGTCTAAAGTGGATGTCTATAGTTATGGGGTGGTGTTGCTTGAGATAGTTTCATGCAGAAAAAGTGTAGAATTTGAGACAGAAGATGAAGCCAAAGCAATCCTAACTGAATGGGCTTATGACTGCTACTCTGAAGGTGTTCTTCATGACTTGGTTGAAGGTGATGAAGAGGCATTGGATGACATGAAGACAGTGGAGAAGTTGGTGATGATTGGCCTTTGGTGTGTGCAAGAGGATCCTGGTTTTAGACCAACCATGAGAACTGTGACACAGATGCTTGAAGGTGTTGTTGAAGTGGAAGTGCCACCATGCCCCTCACAAGTTACTGTTCAATATTCCCTAAACCAATCAGTTGGTGCTAATCCTAGCGGTATTATCTAG 2475 0.4145 MTSPLLLFLILSMILLPFQLISVVAQTQNNLAIGDSHSAGKSTTPWLVSSPSGDFAFGFLPLEDSPDHFILCIWYAKIQNRTIVWFANRENPAPKDSKVELTADDGLVLTAPNGDQLWKTGTSARVSRGVFNDTGNFVLQDDDFNSAWESFKDYRNTLLPYQTLERGQKLSSMRRENDFNRGRFELFFQNDGNLVMRSINLPSGYSNENYYESGTIESNTSSAGTRLVFDRSGDMYILRANNEKYNLSEAGVVVSTTQFYLRATLDFYGVFTLYQHPKGSSGSGGWTPVWSHPDNICKNYLAAASSGVCGYNSICSIGDDKRPTCQCPKWYSLADPNDPYGSCKPDFVPECVEDELSNRKDLYEFEVLTDTDWPLSDYELQRPFNEDQCRQSCMEDCMCSVAIFRLGDSCWKKKLPLSNGRVDATLNGAKAFMKVRKDNFSLISPPIIVKNNRNTLIMVLSVLLGSSAFLNLILVLAICLSTSYVFQYKKRLRRRIGKSDTTVETNLRCFTYEELEEATDGFDKVLGKGAFGVVYEGIVNMGSITRVAVKRLNTFLFEEVQKEFKNELNVIGLTHHKNLVRLLGFCETESERLLVYEYMGNGTLASLLFNVEKPSWKLRLEIVSGVARGLLYLHEECSTQIIHCDIKPQNILLDDYYVARISDFGLAKLLKMNQSRTNTAIRGTKGYVALEWFKNMPITSKVDVYSYGVVLLEIVSCRKSVEFETEDEAKAILTEWAYDCYSEGVLHDLVEGDEEALDDMKTVEKLVMIGLWCVQEDPGFRPTMRTVTQMLEGVVEVEVPPCPSQVTVQYSLNQSVGANPSGII* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00943 824 PIRSF SRK 1 822 IPR024171 GO:0004674
Lapu10g00943 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 599 799 - -
Lapu10g00943 824 Gene3D Transferase(Phosphotransferase) domain 1 599 798 - -
Lapu10g00943 824 Pfam D-mannose binding lectin 82 168 IPR001480 -
Lapu10g00943 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Lapu10g00943 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 25 152 - -
Lapu10g00943 824 FunFam Serine/threonine-protein kinase 155 300 - -
Lapu10g00943 824 Pfam Protein tyrosine and serine/threonine kinase 522 791 IPR001245 GO:0004672|GO:0006468
Lapu10g00943 824 Gene3D - 22 152 IPR036426 -
Lapu10g00943 824 Gene3D Phosphorylase Kinase; domain 1 494 598 - -
Lapu10g00943 824 SMART blect_4 35 155 IPR001480 -
Lapu10g00943 824 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 38 803 - -
Lapu10g00943 824 CDD B_lectin 47 151 IPR001480 -
Lapu10g00943 824 SMART serkin_6 520 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00943 824 Gene3D - 153 281 IPR036426 -
Lapu10g00943 824 SUPERFAMILY Protein kinase-like (PK-like) 502 792 IPR011009 -
Lapu10g00943 824 ProSiteProfiles Protein kinase domain profile. 520 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00943 824 FunFam S-receptor-like serine/threonine-protein kinase 489 598 - -
Lapu10g00943 824 ProSiteProfiles Bulb-type lectin domain profile. 28 152 IPR001480 -
Lapu10g00943 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 215 IPR036426 -
Lapu10g00943 824 ProSitePatterns Protein kinases ATP-binding region signature. 526 550 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00943 Lapu-Chr10 11187977 11196569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00943 506 793 Receptor kinase-like Gene Family AT1G60800 40.816 1.24e-67 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Lapu10g00943 PK_Tyr_Ser-Thr 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00943 - - vra:106773297 1461.05