Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00917 ATGGAACACGAGCAGAAAACCATCACCACCAAGTTCGTGAATTCCAAATTCTTCTTCCCCAAAGTGATTCGCATTTCAGCAACGGATCACAACGCCACAGACTCCTCTAGCGAAGAAGAAGATGAAGAAAAGAGACTTCTTAACCTTCATAGAGTTAAGAAAGTGGTTAATGAGATAAGAATTGTGCATGCAAACAAAACAAAAAGACACAACAACGATAGTTGTTGTTGTGCAACCAAATACAAGGAAAGTATGGAACAACAGAGACAGAATACGAAAGAGCAAAAGTTCCGCGGCGTGCGCCAACGGCCGTGGGGGCGTTGGGCCGCCGAGATAAGAGACCCTTTCCGGCGAAAGCGAGTGTGGCTTGGAACCTTCGACACCGCAGAAGAAGCTGCTATGGTTTACGACAGAGCTGCTATTAGCTTCAGAGGTGTTGATGCTGTCACTAATTTCATCAAACCGCCGTTAAAAGGGTGTGAAAGTGTTGTTAAACAGACGAGTTGTGGTGCATGTGCTTCACCCACTTCTGTTCTCTTGTTTCAGCCTTGGATGGAACCTTTGTGTTTGGAAGAAAGCTTCAAAGAAGAACTGTTTAATGGGTTAAATGATGAAGTTGATACTTTCTTGTTTTCTGATCATGCTCTCTATGATCAACCTCTTCCTACTATGTTTTCTAATGTTGATGTTTCGCTGGATGAGGATCTTGAATCATGTAAATGGGATGTAGATAATTATTTCACTGATGATGCTTTACAATAA 762 0.4239 MEHEQKTITTKFVNSKFFFPKVIRISATDHNATDSSSEEEDEEKRLLNLHRVKKVVNEIRIVHANKTKRHNNDSCCCATKYKESMEQQRQNTKEQKFRGVRQRPWGRWAAEIRDPFRRKRVWLGTFDTAEEAAMVYDRAAISFRGVDAVTNFIKPPLKGCESVVKQTSCGACASPTSVLLFQPWMEPLCLEESFKEELFNGLNDEVDTFLFSDHALYDQPLPTMFSNVDVSLDEDLESCKWDVDNYFTDDALQ* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00917 253 SMART rav1_2 96 159 IPR001471 GO:0003700|GO:0006355
Lapu10g00917 253 CDD AP2 95 152 IPR001471 GO:0003700|GO:0006355
Lapu10g00917 253 ProSiteProfiles AP2/ERF domain profile. 96 153 IPR001471 GO:0003700|GO:0006355
Lapu10g00917 253 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Lapu10g00917 253 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Lapu10g00917 253 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 179 - -
Lapu10g00917 253 Gene3D AP2/ERF domain 95 154 IPR036955 GO:0003700|GO:0006355
Lapu10g00917 253 FunFam Ethylene-responsive transcription factor 2 95 154 - -
Lapu10g00917 253 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
Lapu10g00917 253 SUPERFAMILY DNA-binding domain 96 152 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00917 Lapu-Chr10 10929074 10929838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00917 21 199 AP2-EREBP Transcription Factor Family AT4G27950 45.673 3.99e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu10g00917 AP2 3.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00917 - - pvu:PHAVU_010G035200g 431.024