Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00873 ATGCCTTTGGAGGATCTCTACAACATATTTGGTGCCATGAATCAAAAAAATCAGTTTTGGACTTCATGGCAGCCATTGGAATCACCATGCTTGTTGGAGCATGTGATTTTACCTGTGGAACTTGGGTTCTTTGTGATCTTGTTAGTCCAACTCCTGAGAAAATATGTGAACCTGATCAGCAGGCAAACCAAGGTCCCAGATGCTGCCACAAAATTGATGCATCCAACAACAATGAAATATGGTTTTGCTTACAAAGTCAGCATTGTTTGCAACACGTTGTTGCTGGCTGTTCATGCATCACTGCTGCTACTGATGCTCAACCACGAGATTCAATGTACCTCAAAACTTCAGGCCTTCACATCAGAGATAGTTCAAGTGTTGTCATGGGCAACTAGTCTTGTAGCAATATGCAAGATATCAAAATCGAGCACATATTTCCCATGGATTCTGAGGGCTTGGTGGCTTTGCAGTTTCATTGTGTGTATTATAAGCACAGGCCTTCATGTCCATTTCTGTGTCACCAACAATGGTGAGATTAGTACAAGAGAATGCGCAGACTTCCTTGGTTTGCTTGCTTCAACATGCCTTTTGGTTATTTCCACAAGAGGGAAGACAGGGACTGTGTTGCTTGCCACAACTGGTGCAGCTGAACCACTTCTTGGAGAGAAAACTGAGAAACATTCAGAACGTCTAAAGGAATCTCCATATGGAAAAGCCACGCTTCTCCAACTCATTACCTTCTCTTGGCTGAACCCCTTGTTTGCAATAGGGTATAAGAAACCCCTTGAACAGAATGACATTCCTGATGTTGACACCAAAGACTCTGCAGAGTTTCTGACTAGTTCCTTTGATGAGAGCCTTAGGCAAGTCAAAGAGAAAGATGGCACTGCAAACCCCTCCATCTACAAGGCAATCTACTTGTTTGCTAGGAAGAAAGCAGCAATCAATGCAATGTTTGCAGTGGTAAATGCTTCAGCATCGTATGTTGGTCCTTACTTGATAACTGACTTTGTGGATTTCTTGGGAGAGAAGGAAACGCGTGGCTTGAAGAGTGGATACCTTCTGTCACTGGCTTTTCTCTGTGCCAAAATGGTTGAGACCATAGCTCAGAGGCAATGGATCTTCGGAGCCAGGCAATTAGGCCTTCGCCTCAGAGCCGCGTTGATATCGCATATATATCAGAAGGGCCTACATCTGTCGAGTAGATCGCGCCAGAGTCACACAGGTGGTGAGATAATGAACTACATGAGTGTAGATGTGCAGAGAATCACAGATTTTGTTTGGTATGTAAATGTAATATGGATGCTGCCAATACAAATTTCTTTAGCAGTGTTCATTCTGCATTCAAATCTAGGACTAGGTTCATTGGCTGCACTAGCTGCTACATTGGGAGTAATGACTTTGAACATACCTCTAACAAAGATACAGAAAAGATACCAAGCCAAGATCATGGATGCCAAGGACAACAGGATGAAAGCCACTTCAGAAGTCCTCAGAAACATGAGGACTTTGAAGCTTCAAGCATGGGACAGTCAATTTTCTCAAAGGATAGAAGCACTTAGGAATGTAGAGTACAATTGGCTAACTAAGTCCTTGAGACAAGCAGCATTTTCTGCCTTTATCTTTTGGGGATCACCTACATTCATTTCCGTGATAACTTTTTGGGCATGCATGTTCATGGGGATTGAACTGACAGCAGGAAGAGTGTTGTCTGCATTTGCCACGTTCCGAATGCTGCAGGATCCTATATTCAGCCTACCTGATCTGCTCAATGTCATTGCTCAAGGGAAAGTTTCGGTTGATAGGATCGCTTCCTTCCTTGGTGAGGAAGAAATCCAGCATGATGTCATTGAAAATGTTGCAAAGGAGAAAACAGAATTTGACGTAGTTATTGAGAAAGGGAGATTCAGCTGGGATCCTGATTCAACAACTCCAACCATTGATGAAATAGAGTTGAAAGTTAAGAGGGGAATGAAGGTGGCAGTTTGTGGATCTGTAGGCTCAGGAAAGTCTAGTCTGCTATCAGGCATTTTGGGAGAAATATATAAACGGTCTGGGACAGTTAAGATCAGTGGAACAAAAGCTTATGTTCCGCAATCAGCATGGATACTGACTGGAAACATAAGGGACAACATCACCTTTGGAACAGAGTACAATGGTGATAAGTATGAGAAAACTGTTGAGGCATGTGCATTGAAAAAGGACTTTGAGCTATTCTCATGTGGTGACATGACAGAGATTGGAGAAAGAGGGATTAACATGAGTGGAGGACAGAAGCAAAGGATACAGATTGCTAGAGCAGTTTACCAGGATGCTGATATATACCTTTTTGATGACCCTTTCAGTGCTGTTGATGCTCATACTGGCACTCACCTCTTTAAGGAGTGCCTTATGGGAATTCTCAAAGAGAAAACTATAATTTTTGTTACACATCAAGTTGAGTTTCTTCCAGCAGCAGACCTCATTCTGGTGATGCAAAATGGAAGGATAGCACAAGCTGGAAAATTTGAAGATCTTCTAAAGCAAAATATAGGATTTGAAGCTTTAGTTGGTGCTCACAGCAAAGCTCTGGAGTCAATTGTTGTTGCTGAAAACTCAAGTAGAACAAGTTTCAATTCAATAGCTGAAGAAGGGGAATCCAACTTCAACTCCAAGTCAAGTCTTCAACAAAAACACACACAGCATGACAAAGTGCAAGACAATCCTCCAGAGGACAAAGGAAACGATGGAAAGTTGGTGCAGGAAGAGGAAAGAGAAACAGGAAGCATATCAAAAGAAGTTTACTGGACTTATTTGACCACTGTCAGAGGAGGAATGTTTGTCCCTCTCATTCTCTTGGCACAATCTTCATTCCAAATACTTCAGATTGCCAGTAACTATTGGATGGCTTGGGTTTGCCCCACAAGTAGTGATGCCAAGCCTATATTTGACATGAATTTCATACTACTTGTTTACATGGCACTCTCAGTTGCTGGTTCATTGTGTGTTCTGCTGCGAGCCATGATGGTGTTAAATGCTGGACTTTGGACAGCACAGACACTTTTCACAAAGATGTTGCGTAGTGTGCTCCGCGCCCCCATGGCATTTTTTGATTCTACCCCAGCTGGAAGAATCTTGAATAGGGCTTCCACAGATCAAAGTGTGCTAGACTTGGAAATGGCAAACAAAGTAGGATGGTGTGCTTTCTCAATAATACAGATTCTAGGAACTATTGCAGTGATGTGTCAGGTGGCATGGCAAGTATTTGTCATCTTCATTCCAGTAACTGCAGTCTGCATATGGTATCAAAGATATTATACCCCTACAGCTAGAGAACTGGCTCGATTAGCACAGATACAGATCACTCCAATTCTCCACCATTTTTCAGAATCATTGGCTGGAGCAGCATCAATACGAGCTTTCGATCAAGAAGGCCGTTTCATATACACCAATCTTCTGCTTGTGGATGGCTTCTCAAGGCCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAATTTACTTTCAAATTTTGTTTTTGCCTTCTCACTGGTCATGCTAGTGAGCCTCCCCGAAGGAATAATCAACCCAAGTATCGCCGGATTGGCAGTAACATATGGGATCAATCTGAATGTGCTGCAAGCTTCAGTTATATGGAATATATGCAATGCAGAAAACAAGATGATATCAGTTGAAAGAATTCTTCAGTACACAAATATAACAAGTGAAGCACCTCTTGTGATTGAAGACAGCAGACCACCGAGCAACTGGCCAGAAACTGGAACAATATGTTTCAAAAATCTACAGATACGTTATGCTGAACATCTACCATCTGTGTTGAAAAACATCACTTGCACATTTCCTGGGAAGAAGAAAGTTGGTGTTGTTGGGCGTACTGGTAGTGGAAAATCAACCCTCATACAGGCCATTTTCAGGATTGTTGAACCAAGAGAAGGAAGCGTTGTAATTGACAATGTGGATATATGCAAAATAGGTCTTCATGACTTAAGGTCAAGGCTTAGCATTATCCCACAAGACCCTGCGTTGTTTGAAGGCACTGTTAGAGGAAACCTGGACCCTCTTCAGCAATACTCAGACATTGAAGTGTGGGAGGCTCTAGACAAATGTCAACTGGGCCACCTAGTGAGGGCCAAGGAAGAGAAGTTGGATTCTCCAGTGGTTGAAAATGGAGAGAACTGGAGCGTGGGCCAAAGGCAATTATTTTGCCTTGGAAGAGCCCTTCTGAAAAGAAGCAGCATACTAGTACTAGATGAAGCAACAGCCTCAGTGGATTCTGCAACTGATGGGGTGTTACAGAACATCATAAGTCAAGAGTTCAAAGATAGAACTGTTGTCACAATAGCTCATAGAATCCACACAGTTATTGATAGCGATTTGGTTCTGGTGCTCAGTGATGGGAGAATTGCTGAGTATGATGAACCATCAAGGTTACTAGAGAGAGAAGATTCCTTCTTCTTTAAACTTATAAAGGAGTATTCTGGAAGATCACACAGCTTCAACAACTTGGCAACTCAACATGTCCAAAGCAGGGAACAATTATAG 4554 0.4234 MPLEDLYNIFGAMNQKNQFWTSWQPLESPCLLEHVILPVELGFFVILLVQLLRKYVNLISRQTKVPDAATKLMHPTTMKYGFAYKVSIVCNTLLLAVHASLLLLMLNHEIQCTSKLQAFTSEIVQVLSWATSLVAICKISKSSTYFPWILRAWWLCSFIVCIISTGLHVHFCVTNNGEISTRECADFLGLLASTCLLVISTRGKTGTVLLATTGAAEPLLGEKTEKHSERLKESPYGKATLLQLITFSWLNPLFAIGYKKPLEQNDIPDVDTKDSAEFLTSSFDESLRQVKEKDGTANPSIYKAIYLFARKKAAINAMFAVVNASASYVGPYLITDFVDFLGEKETRGLKSGYLLSLAFLCAKMVETIAQRQWIFGARQLGLRLRAALISHIYQKGLHLSSRSRQSHTGGEIMNYMSVDVQRITDFVWYVNVIWMLPIQISLAVFILHSNLGLGSLAALAATLGVMTLNIPLTKIQKRYQAKIMDAKDNRMKATSEVLRNMRTLKLQAWDSQFSQRIEALRNVEYNWLTKSLRQAAFSAFIFWGSPTFISVITFWACMFMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVIAQGKVSVDRIASFLGEEEIQHDVIENVAKEKTEFDVVIEKGRFSWDPDSTTPTIDEIELKVKRGMKVAVCGSVGSGKSSLLSGILGEIYKRSGTVKISGTKAYVPQSAWILTGNIRDNITFGTEYNGDKYEKTVEACALKKDFELFSCGDMTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTGTHLFKECLMGILKEKTIIFVTHQVEFLPAADLILVMQNGRIAQAGKFEDLLKQNIGFEALVGAHSKALESIVVAENSSRTSFNSIAEEGESNFNSKSSLQQKHTQHDKVQDNPPEDKGNDGKLVQEEERETGSISKEVYWTYLTTVRGGMFVPLILLAQSSFQILQIASNYWMAWVCPTSSDAKPIFDMNFILLVYMALSVAGSLCVLLRAMMVLNAGLWTAQTLFTKMLRSVLRAPMAFFDSTPAGRILNRASTDQSVLDLEMANKVGWCAFSIIQILGTIAVMCQVAWQVFVIFIPVTAVCIWYQRYYTPTARELARLAQIQITPILHHFSESLAGAASIRAFDQEGRFIYTNLLLVDGFSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVMLVSLPEGIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYTNITSEAPLVIEDSRPPSNWPETGTICFKNLQIRYAEHLPSVLKNITCTFPGKKKVGVVGRTGSGKSTLIQAIFRIVEPREGSVVIDNVDICKIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLQQYSDIEVWEALDKCQLGHLVRAKEEKLDSPVVENGENWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDGVLQNIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDEPSRLLEREDSFFFKLIKEYSGRSHSFNNLATQHVQSREQL* 1518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00873 1517 CDD ABC_6TM_ABCC_D1 315 603 IPR044746 GO:0140359
Lapu10g00873 1517 CDD ABC_6TM_ABCC_D2 941 1235 IPR044726 GO:0140359
Lapu10g00873 1517 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 319 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g00873 1517 MobiDBLite consensus disorder prediction 879 918 - -
Lapu10g00873 1517 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 238 1496 - -
Lapu10g00873 1517 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 852 IPR003439 GO:0005524
Lapu10g00873 1517 SUPERFAMILY ABC transporter transmembrane region 310 610 IPR036640 GO:0005524|GO:0016020
Lapu10g00873 1517 SUPERFAMILY ABC transporter transmembrane region 929 1242 IPR036640 GO:0005524|GO:0016020
Lapu10g00873 1517 Pfam ABC transporter 1277 1425 IPR003439 GO:0005524
Lapu10g00873 1517 Pfam ABC transporter transmembrane region 953 1187 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g00873 1517 Pfam ABC transporter transmembrane region 316 578 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g00873 1517 MobiDBLite consensus disorder prediction 890 918 - -
Lapu10g00873 1517 Gene3D - 627 858 IPR027417 -
Lapu10g00873 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1251 1488 IPR027417 -
Lapu10g00873 1517 CDD ABCC_MRP_domain1 629 829 - -
Lapu10g00873 1517 CDD ABCC_MRP_domain2 1258 1478 - -
Lapu10g00873 1517 Gene3D ABC transporter type 1, transmembrane domain 287 615 IPR036640 GO:0005524|GO:0016020
Lapu10g00873 1517 ProSitePatterns ABC transporters family signature. 754 768 IPR017871 GO:0005524|GO:0016887
Lapu10g00873 1517 FunFam ABC transporter C family member 10 297 611 - -
Lapu10g00873 1517 FunFam ABC transporter C family member 3 1243 1495 - -
Lapu10g00873 1517 Gene3D ABC transporter type 1, transmembrane domain 905 1241 IPR036640 GO:0005524|GO:0016020
Lapu10g00873 1517 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1262 1494 IPR003439 GO:0005524
Lapu10g00873 1517 FunFam ABC transporter C family member 5 614 861 - -
Lapu10g00873 1517 SMART AAA_5 1286 1478 IPR003593 GO:0016887
Lapu10g00873 1517 SMART AAA_5 656 829 IPR003593 GO:0016887
Lapu10g00873 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 849 IPR027417 -
Lapu10g00873 1517 Coils Coil 476 496 - -
Lapu10g00873 1517 Gene3D - 1243 1495 IPR027417 -
Lapu10g00873 1517 FunFam ABC transporter C family member 5 904 1241 - -
Lapu10g00873 1517 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 943 1223 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g00873 1517 Pfam ABC transporter 648 781 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00873 Lapu-Chr10 10569683 10582644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00873 612 875 Calmodulin-binding Proteins AT2G36910 27.645 2.06e-19 93.6