Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00862 ATGGCTTCTCCGCCGCCGTTAACGCTAAACGTCGTCGGATCAGACACGGACAGCACGTTCCCGACCGTCGTTTCGAGTTCCCTAACGCCGCCGTCCCCTCGCCGTTCGTCTCCGTTACAGAGTCTCAGTCCCAGCATTCTCATTATCGTCACGGTTCTCGCCGTCACCGTTATTGTTTCTCTCGCGCTCTGCTTCCTCCTCCGCCACCTCAACCGCCGCTGCCTCCGCCGATTCTCCTCCGCCGCCGCGCCCTCCGCATCCGCCTCTGCCACGCCGATATTCTCCTCCAGCCGCCGCATCTCGCCGGAGATTGTGCACTCCTCCTCCGCCGCCGCTGCCGCTGCCGCTTCCGTCATCGACACGCTCCCGCTATTCACGTTCTCCTCCGTCACGCGCCGCTCAGCGTCGGCCGCCGCCGACTGCGCCGTCTGCCTCTCGAAGTTCCACAACCACGACCTCCTCCGCCTCCTCCCTCTCTGCTGCCACGCCTTCCACGCCGAGTGCATCGACACCTGGCTCCAGTCCAACCTCTCGTGCCCGCTCTGCCGCTCTCCCATCGCCGCTGCGGAATCCGACCTGGCGAAAATCCTCCGCCCGCCGTCCTCCACCGCCGGCAGCAGTGACAGCTTCCGCCTCGAGTTAGGCAATATCAGCCGCCGTGGCGCCGAAGGCGCCACCGCCGCTCACGGCGATTCACGGTCCCGGTCCTATTCCATTGGTTCGTTCGAGTATTTGGTGGACGACGAGTCGGAGGTTGCATTCAGCCACGCCCGCCGGAGGAGCGAGGACGACGCGAAGGAGTTTCCGGCGGCGGAGGCTCACACTCCGTCGACTCATAACGAGGCGAGTCTGGCCGGCGAGGTAGCCGGCGTTAGGAGCTGGCTTAAGGACTACATGGATAGGTTTTCCGCTTCTATCTCGTCGCGAACGGCGTCGTTTCGAAGCTCTGGAAGGTTCTTCAGCGGCGGCGGGAGTAGCCGGCGAAGCGACGTGGTTCCGGTTGCCGCGGAATACGACTTGGAAGGGAACCGAATTGGCGAAGAGATCAGCGAAATGTTTCGTTGGCTTTCAGGGGTATGA 1080 0.637 MASPPPLTLNVVGSDTDSTFPTVVSSSLTPPSPRRSSPLQSLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRFSSAAAPSASASATPIFSSSRRISPEIVHSSSAAAAAAASVIDTLPLFTFSSVTRRSASAAADCAVCLSKFHNHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSPIAAAESDLAKILRPPSSTAGSSDSFRLELGNISRRGAEGATAAHGDSRSRSYSIGSFEYLVDDESEVAFSHARRRSEDDAKEFPAAEAHTPSTHNEASLAGEVAGVRSWLKDYMDRFSASISSRTASFRSSGRFFSGGGSSRRSDVVPVAAEYDLEGNRIGEEISEMFRWLSGV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00862 359 CDD RING-H2_EL5-like 140 183 - -
Lapu10g00862 359 FunFam E3 ubiquitin-protein ligase ATL4 114 188 - -
Lapu10g00862 359 SUPERFAMILY RING/U-box 133 188 - -
Lapu10g00862 359 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Lapu10g00862 359 MobiDBLite consensus disorder prediction 256 281 - -
Lapu10g00862 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 192 IPR013083 -
Lapu10g00862 359 MobiDBLite consensus disorder prediction 256 270 - -
Lapu10g00862 359 MobiDBLite consensus disorder prediction 20 40 - -
Lapu10g00862 359 Pfam Ring finger domain 140 183 IPR001841 -
Lapu10g00862 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 38 286 - -
Lapu10g00862 359 SMART ring_2 141 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00862 Lapu-Chr10 10366321 10367629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00862 25 212 C3H Transcription Factor Family AT4G28890 32.984 5.79e-23 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00862 K10663 - gmx:100817751 440.654