Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00855 ATGATGATTGAGGACAATCCCATTGGTCATTCTCACATCAACAACACACTTGATGAAGATAATGATAATGATCTAAATTTCTCATTTCACAACCCTTCTACCATGTCCTCCTACAACAATGATAGTGGTAATAGTAACAATGTTTTCTCAACCATCATGGCAAGTAGTAGCATATTGTCCTTTGAAGATGCAAGCTTTGATGGGAAAATGCTCAAGAGTAATAGCTCAAGCTCCACCATTTCTCAAGATGTTGCTAACAATAATGCTTCTGCTGCTGCTTCTTCTTCTTCTTCTTCTTCTGCACCATCCTCATCCACCTTCATTTTGTCCTTTGAAAACTCAACCATGAAACCTTCCCTCCATCATGGACCTAATCATAATCATGGTGATTATTTTGGTGGGGATGTGCCATGTTCTTCACTTTTGAGCTCAGAAAGTTACCATGTCACCAAACCAAAGGCCAAGCAAGGTGCCAATAAGAAGAATAGAAGCTCATCTGAGATTCGAGATCACATCATGGCAGAGAGAAAAAGGAGACAGGAACTCACTGAGAGGTTCATAGCACTTTCTGCCACCATACCTGGATTGAAGAAGACAGACAAGGCCTATATACTTAGGGAAGCAATCATATACATGAAACAACTTCAAGAGAGAGTGAAGGAGCTAGAAAATCAGAACAAGAGGAAAACAGCAGATTCAAGAATATTGGTCAAGAAATATTCCCAAGCGTGCTCAAGAGAAGAAGAAACTACATCATGTGATGAAACCAAGTCTCATAGATCAACTCCTCCACTTCCTCAGGTTGAAGCAAGAGTGTTGGAAAAGGAGGTTCTCATTGGAATTCACTGCCACAAACAGAAGGACATTGTGCTCAAAATCATGGCCTTGCTCCAAAATCATCATCTCTCTCTTGCTAGTAGCAGTGTGTTGCCCTTTGGAACTTCCACTCTGAAAGTTACAATCATTGCACAGATGGGAGAAAAATACTGCATGACAGTGAATGATCTTGTAAAAGGTCTGAGGCAAGATCTCTTTAAAAGCACATGA 1047 0.404 MMIEDNPIGHSHINNTLDEDNDNDLNFSFHNPSTMSSYNNDSGNSNNVFSTIMASSSILSFEDASFDGKMLKSNSSSSTISQDVANNNASAAASSSSSSSAPSSSTFILSFENSTMKPSLHHGPNHNHGDYFGGDVPCSSLLSSESYHVTKPKAKQGANKKNRSSSEIRDHIMAERKRRQELTERFIALSATIPGLKKTDKAYILREAIIYMKQLQERVKELENQNKRKTADSRILVKKYSQACSREEETTSCDETKSHRSTPPLPQVEARVLEKEVLIGIHCHKQKDIVLKIMALLQNHHLSLASSSVLPFGTSTLKVTIIAQMGEKYCMTVNDLVKGLRQDLFKST* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00855 348 PANTHER BHLH TRANSCRIPTION FACTOR 33 346 - -
Lapu10g00855 348 MobiDBLite consensus disorder prediction 150 169 - -
Lapu10g00855 348 Coils Coil 205 239 - -
Lapu10g00855 348 SMART finulus 172 221 IPR011598 GO:0046983
Lapu10g00855 348 Gene3D - 165 236 IPR036638 GO:0046983
Lapu10g00855 348 Pfam Helix-loop-helix DNA-binding domain 171 216 IPR011598 GO:0046983
Lapu10g00855 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Lapu10g00855 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 234 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00855 Lapu-Chr10 10310870 10314475 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00855 153 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.845 5.77e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu10g00855 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00855 - - vra:106773267 407.527