Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00849 ATGGAGCTAATGAAGGATGATGATGAGTCATGGCAGAAATGTGTTTCATTTTTGGAAAACAATGATTGGCGTATTTTCAGTGATTCTGTGAACTCTGTTGAAGAAGACTTCAAGGGTGATAGTTCAGTGGATCCTGCAGAATTCTCATGCAACGAAAGCCCCACAACCCTTCTAAGCAATTTTTCATCTTTGGAAGAGAACAATGGCTTTGACATGACGAGTCTCACCCAACATGTTTCTCCGCAGAAACCAAAGTCTTGTATTCTGTCCTTTGAGGATTCCACTTCAGTGCCAATTGTTGCCAAGAACACGTGCCAACATCATGGTGAACATTCAAAGCAGAAACAAGAAAAAAAGCCACACAATGTAAAAGCCCTCAAGAGGGAAAGAACCTCTTCTCAGACACTTGATCACATAATGGCTGAGAGAAAAAGGAGAGAGAATATCACCAGAATGTTCATTGCTCTTTCCGCCCTTATTCCTGGCTTGAAAAAGATGGACAAGGTTTCTGTTCTTAACAATGCTGTAGAGTACGTGAAGTATCTTGAGCAACGTGTGAAAGAGTTGGAGCAAGAGAACGAGAAGAAGAAGATAGAATCAGTGGAATGCTTGAAACTAAGCAAAACCAACATGGTTGATTGTGACTTTTCATGGACCTCTCATCATGATGATGATGATGATGATAAAATTACCAAGAAATGTTCGAAAGTTGAAGCAAGAGTAGCAGGAAAAGATGTACTCATCAGAGTAACGTGTGAGATGCAGAAGAACATTGTACGAAATGTAATGGCCAAGCTTGAAGCTCATAATCTCTCCATAGTTTGCAGCAATGTTTTGCCTTTTGGAAATTCCTATCTCACCATTACCAGCATTGCTGAGATGAACCCTAAATTCACCATGACAGAGGACAACATAGTGAAAAGGTTGACTGAAGATTTGTTGAAGGTGCTGTAG 954 0.4036 MELMKDDDESWQKCVSFLENNDWRIFSDSVNSVEEDFKGDSSVDPAEFSCNESPTTLLSNFSSLEENNGFDMTSLTQHVSPQKPKSCILSFEDSTSVPIVAKNTCQHHGEHSKQKQEKKPHNVKALKRERTSSQTLDHIMAERKRRENITRMFIALSALIPGLKKMDKVSVLNNAVEYVKYLEQRVKELEQENEKKKIESVECLKLSKTNMVDCDFSWTSHHDDDDDDKITKKCSKVEARVAGKDVLIRVTCEMQKNIVRNVMAKLEAHNLSIVCSNVLPFGNSYLTITSIAEMNPKFTMTEDNIVKRLTEDLLKVL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00849 317 SMART finulus 139 188 IPR011598 GO:0046983
Lapu10g00849 317 Gene3D - 109 199 IPR036638 GO:0046983
Lapu10g00849 317 Coils Coil 172 199 - -
Lapu10g00849 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Lapu10g00849 317 PANTHER BHLH TRANSCRIPTION FACTOR 47 313 - -
Lapu10g00849 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 200 IPR036638 GO:0046983
Lapu10g00849 317 Pfam Helix-loop-helix DNA-binding domain 138 183 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00849 Lapu-Chr10 10245862 10248377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00849 30 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.423 2.66e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu10g00849 HLH 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00849 - - vun:114166535 402.519