Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00836 ATGCCTCCGAAAACGGCGAAGCGTGGGTCAGCGTCGAGCGCCTCGAAGAGGGGTGGCAGAGGCGGCAGGGGAACCCCGAAGGGTGCGCTGAGCCAGCAGCACCATGAAGCATCGGAAGAGGTAGTGAAGGTCGAGGAGAAACAAACCACTGTCGTTGTTGCTGAGGAGGAACAACCCAAGGTGGTGGAAGAAGAGAACCCTGTGGTTGAAGAGAAACAGCTTGTGGTTGAAGAGAAAGAATCTGTTGTGGTGGTTGAGGATAAGGCTATTGATATGAACCAAATGGCGCCGGAGGCTGTGGAAGAAGCCTCCCATTTGGCTAATGGGTTGACTGCGGCGAAAAACAATGAAGAGGAGGTTAAAGAATCAATAGATGAATATGAGAAAGATGAACGCTTAGATTTAGAGGATAATGATCCTGAGTATGAAGCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATAGAACAAGATGAGGGTCATGAGGTGGGAAATGAAGTAGAGGAAGAAGAGGCTGAAGATAATTTAGGTGAAGAAGAGGGTGATACAGGTGAGGAAGAAGTTGAAGATGTTCATGATGAACTTGAGGGTGAAGAGGAGCATGAGCATACTGGTGAGGACCATGAGCACCCAGACTTTGCTGATGTGGAGGAGGAACATCGAGAGGTTGTGAAGGAGAGGCGTAAGCGGAAAGAGTTTGAAGTTTTTGTTGGTGGCTTGGACAAGGATGCTACTGAGAGTGATCTGAGGAAGGTTTTTGGTGAAGTTGGGATGGTTACAGAGGTCAGGTTGATGATGAATCCTCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTGGAGCAAGCTAAACGAGCTGTAGCAGAGCTCAGAAACCCTGTGATTAATGGCAAACAATGTGGTGTTACTCCTAGTCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACGAAGGAAGCTTTGAAAGAGAAGCTGAAACATTATGGAGTTACAAATGTTGAGGATTTGACTTTGGTAGAAGATACTAATGATGAAGGGAAGAATCGTGGGTTTGCATTTTTAGAATTTTCCTCTCGTTCTGATGCTATGGATGCCTTTAAGCGACTGCAGAAGAGGGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAAGTTTCTTTTGCAGATTCTTTTATTGACCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATGCATTGCCTCCTTCATGGGATGAAGATTATGTGCGAGATCTTCTCAAGAAATATGGAGAGATTGAAAAGATTGAGTTAGCCAGGAACATGCCAGCTGCCCGTAGGAAGGATTATGGGTTTGTTACATTTGGCACACATGATGCTGCTGTAAAATGTGCTGATAGTATTACAGGCACAGAGTTGGGTGAAGGAGACAAGAAGGCAAAAGTTAGAGCGAGGCTGTCAAGACCACTTCAGAGAGGTCGCGGAAAACACATAAGTCGTGGTGACTATCGTTCTGGTCGAGGGTCTGGAATGATGACAAGGCCTTCATGGAGCCGACCTGCACCTCGTACTTTTACTCGTGGTGCAAGAGGGGTTGGAAGTCGTGCTCCACCTGTCAGACCAGTTAGTGTGAGAGATAGACGCCCTATCATGTCCATACCAGCTAGAAGTAGGCCAGTGCCTCCTCCATCTAGATCTTATGATAGGAGACCAGTTGCACCTGCATATCCAAAAAGTAGCATGAAGAGGGATTACAGTCGGCGTGAGGATATACCACCTCCAAGAAGTAGAGTTGCTGTAGATTATGGCTCAAGGGTGGCTTCTGAAAGACGACCATCTTACAGGGACTATTCTGCACGTGGTCCCGGTCCTAGCTACACTGAGCTCCCAAGAAGCACATCTCGGGCTGCACCAAGGAGGGGCTATGTGGATGATGGATATAGCCAAAGATTTGAGAGGCCTCCACCTCCACCTCCTCCCCATCTTAGTTACCGTGAAGGACGTCCACGAGATTATGATACTCTGTCTGGCTCAAAACGTTCTTATGCTGCTATAGACGATGTTCCTCCCCGGTATGCCGATACTGGTGCTCGCCAATCAAGAGCTCGATTAGACTATGACTATGGTGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCCAGTATGGGATATGGTAGCAGCAGCAGAAGCTCTATGTCTAGTCAAGATTCGCATGGGATGTATAGTAGTCGACAGGGCATGAGTTATGGAGGAGGTTCTTTTACTGGTGATGTTGGTGGCTTGTACTCATCAAGTTATGGCAGTGATTACATTTCTCGTGGAAGTGATGTTGGTGGCAGCTCATATTCGTCAGTGTATTCAAGCAGGGGCGTGGGTGGTGGTAGCAGTTATATGGGTGGAGGTGGATCAGGATCTTATTATTGA 2457 0.4668 MPPKTAKRGSASSASKRGGRGGRGTPKGALSQQHHEASEEVVKVEEKQTTVVVAEEEQPKVVEEENPVVEEKQLVVEEKESVVVVEDKAIDMNQMAPEAVEEASHLANGLTAAKNNEEEVKESIDEYEKDERLDLEDNDPEYEAEEYGGVDYDEKEIEQDEGHEVGNEVEEEEAEDNLGEEEGDTGEEEVEDVHDELEGEEEHEHTGEDHEHPDFADVEEEHREVVKERRKRKEFEVFVGGLDKDATESDLRKVFGEVGMVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELRNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVKCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRSGRGSGMMTRPSWSRPAPRTFTRGARGVGSRAPPVRPVSVRDRRPIMSIPARSRPVPPPSRSYDRRPVAPAYPKSSMKRDYSRREDIPPPRSRVAVDYGSRVASERRPSYRDYSARGPGPSYTELPRSTSRAAPRRGYVDDGYSQRFERPPPPPPPHLSYREGRPRDYDTLSGSKRSYAAIDDVPPRYADTGARQSRARLDYDYGGSASQYGDAYGDRLGRSSMGYGSSSRSSMSSQDSHGMYSSRQGMSYGGGSFTGDVGGLYSSSYGSDYISRGSDVGGSSYSSVYSSRGVGGGSSYMGGGGSGSYY* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00836 818 Coils Coil 110 133 - -
Lapu10g00836 818 MobiDBLite consensus disorder prediction 784 802 - -
Lapu10g00836 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 412 494 IPR000504 GO:0003723
Lapu10g00836 818 MobiDBLite consensus disorder prediction 1 44 - -
Lapu10g00836 818 MobiDBLite consensus disorder prediction 494 704 - -
Lapu10g00836 818 FunFam Heterogeneous nuclear ribonucleoprotein Q 316 398 - -
Lapu10g00836 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 399 IPR000504 GO:0003723
Lapu10g00836 818 MobiDBLite consensus disorder prediction 732 755 - -
Lapu10g00836 818 Gene3D - 150 315 IPR012677 -
Lapu10g00836 818 MobiDBLite consensus disorder prediction 199 224 - -
Lapu10g00836 818 Gene3D - 316 398 IPR012677 -
Lapu10g00836 818 MobiDBLite consensus disorder prediction 731 755 - -
Lapu10g00836 818 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 169 315 - -
Lapu10g00836 818 SUPERFAMILY RNA-binding domain, RBD 230 313 IPR035979 GO:0003676
Lapu10g00836 818 MobiDBLite consensus disorder prediction 784 818 - -
Lapu10g00836 818 CDD RRM_SF 414 488 - -
Lapu10g00836 818 MobiDBLite consensus disorder prediction 110 224 - -
Lapu10g00836 818 SMART rrm1_1 316 395 IPR000504 GO:0003723
Lapu10g00836 818 SMART rrm1_1 236 309 IPR000504 GO:0003723
Lapu10g00836 818 SMART rrm1_1 413 488 IPR000504 GO:0003723
Lapu10g00836 818 MobiDBLite consensus disorder prediction 586 600 - -
Lapu10g00836 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 414 479 IPR000504 GO:0003723
Lapu10g00836 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 305 IPR000504 GO:0003723
Lapu10g00836 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 383 IPR000504 GO:0003723
Lapu10g00836 818 Coils Coil 27 47 - -
Lapu10g00836 818 CDD RRM_SF 317 384 - -
Lapu10g00836 818 CDD RRM_SF 237 308 - -
Lapu10g00836 818 Gene3D - 404 520 IPR012677 -
Lapu10g00836 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 313 IPR000504 GO:0003723
Lapu10g00836 818 FunFam RNA recognition water-stress protein1 402 523 - -
Lapu10g00836 818 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 815 - -
Lapu10g00836 818 SUPERFAMILY RNA-binding domain, RBD 313 479 IPR035979 GO:0003676
Lapu10g00836 818 MobiDBLite consensus disorder prediction 129 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00836 Lapu-Chr10 10143346 10151213 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00836 230 493 Eukaryotic Initiation Factors Gene Family AT1G49760 23.746 2.34e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00836 - - gmx:100779340 1138.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00836 10 10143346 10151213 Lapu10g00836 10 10143346 10151213 ECH
Lapu10g00836 10 10143346 10151213 Lapu1g01417 1 27026228 27033593 PCT