Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00798 ATGGCTGCTACAACATCTTGTGATTTTTCTTCTTTGCACTCTCTTCAATACAATCTGCTTGAGCTTGAACATGATTCCACACACAGTGGCATGGAGAGTACCAGCAATGATGAGAATAAGTTGTCTGAAAGAGAAGAGTCTAGGGCAGGGCGTGAGGTTCACGCGCCTCCCAAATGGAGGCGGTATAGGGGTGTGAGACGACGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGAGATCCAAAGAAAAAGGGGGCTAGGGTTTGGCTTGGAACTTTTCTAAGTGAAGAAGAAGCAGAGCCAATGAAAAAAATTGCAACAAACACATCACAGTCTTCTTTGTCGCCTTTAGAGTTGAAAGGATCAAAGAAAAAGAAAACCCTAGTTGATTTGTTGAATCAGTTGGCGAAGAAAAGAAAAAGGGTTGGGTTTAAAAGTTTTGAGATCTTAGATAAAATTTCTTCTTCAGAGTTCATCTAA 477 0.4277 MAATTSCDFSSLHSLQYNLLELEHDSTHSGMESTSNDENKLSEREESRAGREVHAPPKWRRYRGVRRRPWGKFAAEIRDPKKKGARVWLGTFLSEEEAEPMKKIATNTSQSSLSPLELKGSKKKKTLVDLLNQLAKKRKRVGFKSFEILDKISSSEFI* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00798 158 Gene3D AP2/ERF domain 60 106 IPR036955 GO:0003700|GO:0006355
Lapu10g00798 158 SUPERFAMILY DNA-binding domain 61 99 IPR016177 GO:0003677
Lapu10g00798 158 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Lapu10g00798 158 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Lapu10g00798 158 SMART rav1_2 61 115 IPR001471 GO:0003700|GO:0006355
Lapu10g00798 158 MobiDBLite consensus disorder prediction 25 55 - -
Lapu10g00798 158 Pfam AP2 domain 61 98 IPR001471 GO:0003700|GO:0006355
Lapu10g00798 158 PANTHER DNA-BINDING DOMAIN 35 98 IPR044808 GO:0003700|GO:0009873
Lapu10g00798 158 MobiDBLite consensus disorder prediction 24 55 - -
Lapu10g00798 158 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00798 Lapu-Chr10 9760893 9761473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00798 54 141 AP2-EREBP Transcription Factor Family AT2G44840 48.315 4.22e-19 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu10g00798 AP2 2.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00798 K09286 - gmx:100793710 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00798 10 9760893 9761473 Lapu10g00798 10 9760893 9761473 ECH