Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00788 ATGAATCAACAACACCCTTTCAACATGCACAAACCTCCTCAACCTGTTTCAAACCAAAAGGCTTCTTCTTTCAACAATTTGTTCCATTTTCATGGCGCCTCTCATGTGACTAATCGGAGCTCTGAGCCTCCACCGTTCTTCTTCGGAATAGATGTCAACTTGCCACCGCCACCATCTTCTGTGGCGCCCTCTTACGAAGAGAACGGTGTGTCTTCGCCGAACAGCGCAGTATCGAGCATCAGCGGGAAGAGGAGCGAAAGAGAGGAGAATGAGAGAGGGTCGTGTTCTCTAGGCGGAAGTGAAGATGATGACGGTGGAGGGTGCGGTGGCGATGGCGACATGTCCAGGAAGAAACTGAGGTTGTCGAAGGAACAGGCCTTGGTGCTGGAAGAAACATTTAAGGAACACAACACTCTGAATCCGAAACAAAAGCAAGCTTTGGCAAAGCAGTTGAATCTGAGTCCTAGACAGGTTGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAGACTGAAGTGGATTGTGAATACTTAAAGAGGTGCTGTGAGAATCTAACTGAGGAGAATAGGAGGCTACAGAAGGAAGTGCAAGAGCTAAGAGCATTGAAATTTTCTCCACAGCTCTACATGCACATGAACCCTCCCACCACCCTTACAATGTGCCCTTCCTGTGAGCGTGTTGCTGTCTCATCTGCATCCTCCTCCTCATCGGCTGCCACACCTTCTGTGCCACCTCCGGCTAATCACAACCCATCAGGTCCTACCATCCAGCGGCCTGTGACCATCAACCCTTGGGCAGCAATGTCAATTCAACGCCGTCCCCTGCCGTAA 840 0.5012 MNQQHPFNMHKPPQPVSNQKASSFNNLFHFHGASHVTNRSSEPPPFFFGIDVNLPPPPSSVAPSYEENGVSSPNSAVSSISGKRSEREENERGSCSLGGSEDDDGGGCGGDGDMSRKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKFSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSSAATPSVPPPANHNPSGPTIQRPVTINPWAAMSIQRRPLP* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00788 279 SUPERFAMILY Homeodomain-like 101 173 IPR009057 -
Lapu10g00788 279 CDD bZIP 165 204 - -
Lapu10g00788 279 FunFam Homeobox-leucine zipper protein 18 101 177 - -
Lapu10g00788 279 MobiDBLite consensus disorder prediction 235 279 - -
Lapu10g00788 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 57 246 - -
Lapu10g00788 279 Coils Coil 178 205 - -
Lapu10g00788 279 MobiDBLite consensus disorder prediction 82 98 - -
Lapu10g00788 279 Gene3D - 120 170 - -
Lapu10g00788 279 ProSiteProfiles 'Homeobox' domain profile. 112 172 IPR001356 GO:0003677
Lapu10g00788 279 SMART halz 172 215 IPR003106 GO:0006355|GO:0043565
Lapu10g00788 279 ProSitePatterns 'Homeobox' domain signature. 147 170 IPR017970 GO:0000981|GO:0006355
Lapu10g00788 279 SMART HOX_1 114 176 IPR001356 GO:0003677
Lapu10g00788 279 Pfam Homeobox associated leucine zipper 172 205 IPR003106 GO:0006355|GO:0043565
Lapu10g00788 279 CDD homeodomain 116 173 IPR001356 GO:0003677
Lapu10g00788 279 MobiDBLite consensus disorder prediction 64 81 - -
Lapu10g00788 279 MobiDBLite consensus disorder prediction 1 23 - -
Lapu10g00788 279 Pfam Homeodomain 116 170 IPR001356 GO:0003677
Lapu10g00788 279 MobiDBLite consensus disorder prediction 55 115 - -
Lapu10g00788 279 Pfam HD-ZIP protein N terminus 3 88 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00788 Lapu-Chr10 9686710 9689456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00788 3 277 Homeobox Transcription Factor Family AT3G60390 59.589 9.86e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu10g00788 HD-ZIP_N 6.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00788 K09338 - gmx:100798480 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00788 10 9686710 9689456 Lapu10g00788 10 9686710 9689456 ECH