Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00780 ATGCATGTGAGAAAAATGCATGGGAAAATGGAGCAAGAAGAGTATATAAGGAAAGGGCCATGGAAAGCAGAAGAAGATGAGGTGCTACTGAACCATGTGAAGAAGTATGGTCCTAAAGATTGGAGCTCCATTCGATCCAAGGGTCTTCTTCAAAGGACTGGCAAGTCGTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTCAAGAATGGTTGCAAGTTCTCGCTTGAGGAAGAGAGGGTTGTCATAGAGTTGCAGGCACAGTTTGGGAACAGGTGGGCTAAGATTGCATCCTATTTGGCAGGGAGAACTGACAATGATGTGAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCCAGGATTCTGCAGACATCAACAACAACTGCCAAATCACAGAAAAGTAAAACAAAAGTTCCTACACTTCTTGATGTTCCAACTTTGGAGGCTCCAAAGTTCAGTTCATCATCAGAGGGAGAGTCATCATCAAGGCCTCACTCATGCTCACTACCCTTAATTGAGAATTCTGAGATGATCAAAATGGTATCTTTGCCAGATCTCATAAAGTCTGAGTTACCTAGTTCTGACCCAATCCATGTTGAAGAGTTTACCCTTTTTGAGAGCTATAAAAGTAGTGAGCAGAATCAACAGAATTCCTTTCCTCAGATTCCAGAACTCCAAAATGATCTCACATTCCCAATGGGAAGCCAAGATGTCTTGGCCAGAATCGATGAACCATGTTTCATTGAAGATTTTTGTGCTCTAGATGATGCATCTGAGTTTGGAATGGGTTTTCAACACCCCATCGGATTCCCTTTCTTTGAGCCTCCAGGAAGTTGCAGAATGGGGACAAGGGATACCATTGATAAGTTCAAAAGCAGTGACAGCTTCTTCGATGACTTCCCTACGGACATGTTTGATCTCATAGACCCACCTGCAAGCCCTTCAAACTTATAA 960 0.4323 MHVRKMHGKMEQEEYIRKGPWKAEEDEVLLNHVKKYGPKDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAQFGNRWAKIASYLAGRTDNDVKNFWSSRQKRLARILQTSTTTAKSQKSKTKVPTLLDVPTLEAPKFSSSSEGESSSRPHSCSLPLIENSEMIKMVSLPDLIKSELPSSDPIHVEEFTLFESYKSSEQNQQNSFPQIPELQNDLTFPMGSQDVLARIDEPCFIEDFCALDDASEFGMGFQHPIGFPFFEPPGSCRMGTRDTIDKFKSSDSFFDDFPTDMFDLIDPPASPSNL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00780 319 FunFam Transcription factor GAMYB 73 142 - -
Lapu10g00780 319 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Lapu10g00780 319 PANTHER TRANSCRIPTION FACTOR DUO1 9 318 - -
Lapu10g00780 319 CDD SANT 74 113 IPR001005 -
Lapu10g00780 319 CDD SANT 20 65 IPR001005 -
Lapu10g00780 319 Pfam Myb-like DNA-binding domain 21 80 - -
Lapu10g00780 319 ProSiteProfiles Myb-like domain profile. 74 117 IPR001005 -
Lapu10g00780 319 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Lapu10g00780 319 Gene3D - 18 70 - -
Lapu10g00780 319 FunFam MYB transcription factor 18 70 - -
Lapu10g00780 319 Gene3D - 73 142 - -
Lapu10g00780 319 SMART sant 17 67 IPR001005 -
Lapu10g00780 319 SMART sant 71 119 IPR001005 -
Lapu10g00780 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 69 IPR017930 -
Lapu10g00780 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 121 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00780 Lapu-Chr10 9636532 9638805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00780 3 316 MYB Transcription Factor Family AT3G60460 49.387 4.42e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu10g00780 Myb_DNA-bind_6 6.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00780 K09422 - gmx:100805384 499.975