Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00737 ATGGGAGGCGAAGGAAGGGCCGGCATGAAGAAGAAGAAGAATGCAAAATCTGGGGGTTTTGAGTCACTGGGTCTGAGTCCGAATGTGTTCAGGGGAATCAAGCGCAAAGGCTACAAAGTCCCCACTCCCATTCAGCGCAAGACCATGCCTCTCATCCTCTCTGGCTCCGACGTCGTCGCCATGGCTCGCACCGGCTCCGGCAAAACGGCGGCATTTCTCGTCCCCATGATTCACCGCCTCAACCTGCACATCCCTCAGTCTGGAGTCAGAGCCCTGATTCTGTCCCCCACCAGGGACCTCGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTCGCCCACTTCACAGACCTTCGTGTGAGTTTGTTAGTCGGTGGCGATAGCATGGAGAGTCAATTTGAGGAGTTGGCTCAGAGTCCTGACATTATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCCGAGGTCGATGACATGTCCTTGCGCAGCGTGGAGTACGTTGTTTTCGACGAGGCCGATTGTTTGTTTGGCATGGGTTTTGCGGAACAGTTGCATAAGATTCTTGCTCAGCTCGGGGAGAATCGCCAGACCTTGCTTTTCAGTGCCACATTACCCAGTGCTCTTGCTGAGTTCGCCAAGGCTGGTTTGAGAGACCCTCAGCTTGTTCGCCTCGACCTTGAGACTAAGATCAGCCCTGACTTGAAGCTCGCTTTCTTCACCTTGAGGCAGGAGGAGAAATACCCTGCTCTCATCTACTTGATCAGGGAACATATTGGTTCTGATGAGCAGACATTGATTTTTGTGTCCACCAAACATCATGTGGAGTTTCTCAATGTTTTGTTTCGCCAAGAGGGTATTGAGCCGTCTGTGTGTTATGGCGACATGGATCAGGATGCTCGCAAAATTCATGTGTCGAAGTTTAGGGCTAGAAAGACCATGTTGTTGATTGTAACTGACGTTGCGGCTCGTGGCATTGACATTCCATTGCTTGATAATGTCATCAATTGGGACTTCCCCCCCAAGCCTAAAATATTTGTCCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGAACTGGTACTGCATATTCTTTTGTGACTCCTGAGGATATGGCCTACCTCTTGGATCTTCATTTGTTTCTTTCAAAACCCATCAAACCTGCTCCCACTGAAGAAGAGGTCTTGCAGGATATGGAGGGAGTGATGTCTAGATGTGACCAGGCTCTGGCAAATAGAGAAACCGTTTATGGTCGTTTCCCACAAAAAGTCATTGACCTTGTTTCGGACAGAGTTAGGGAAATTATTGATACTTCTGCAGAACTGGAATTGTTGCAGAGAACCTGTAAAAATGCATTTCGTTTATATTCTAAAACAAAACCCTTACCTGCCAAGGAGTCCATCAAAAGAGTAAAGGATTTGCCTCGTGAAGGGCTGCATCCAATGTTCATGAAGGTGTTGGAAACGGGGGAGTTAACAGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAACAAACCATTTTGGAAACTGAAGGAGAAGCAGCTAAATCAAAGCATCAAAAGGGCCCTTCTGGACAATGGGTCGATGTGATGAAAAGGAAAAGAGCCATTCACGAGAATATTATAAATTTGGTTCATGAACAACAGCAGTCTAAGAGTAATAATGAAAAGGAGGAAATCGAATCAGAAATCAGTCCTTCCATGGAGAAAGGAAGAAAAGCAGCACGTGGTTCTAAGAGAAAGCCCCAAAGTTTCAAGGATGAGGATCATTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTTCAGTAAAAGCCAATGAAGACTTTGCTTCAAATAGATTGGACTCAGCTGTCCTAGATCTGGTTGCAGATGATGGTGCTGGCATTCAGAAACAAAGATCAATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAACGGTGACCGTGTTGCGGCAAACGGAAAGATAAAGACAGAGAGTGGTGCAAAAACGAAGGCCACCAAGACTGGTATGTACAAGAAGTGGAAAGAACGCTCACACGGTAAGATAGCACTTAGAGGGACAAATGACGGTGATTCTCAGGAATCAACAAGTTTGGCAGGATCTTACCAAAGAGGTCGTAGGAATTTTAAAGGCAGCAAGAAGCAGCATGCAATGCTCAATGCTCATGTGCGTTCAGAAATCAAAGGTATGGATCAAATACGAAAGGAAAGGCAGACAAAGGCCAACAGGACTTCTTATATCAAGAGCAAGTCGACGAAGGGTAAAAAGTTTGGTAAAAATGGTAAAAGAAGAAAAGGCAAATAA 2334 0.4576 MGGEGRAGMKKKKNAKSGGFESLGLSPNVFRGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMIHRLNLHIPQSGVRALILSPTRDLALQTLKFTKELAHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHKILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTLRQEEKYPALIYLIREHIGSDEQTLIFVSTKHHVEFLNVLFRQEGIEPSVCYGDMDQDARKIHVSKFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKPAPTEEEVLQDMEGVMSRCDQALANRETVYGRFPQKVIDLVSDRVREIIDTSAELELLQRTCKNAFRLYSKTKPLPAKESIKRVKDLPREGLHPMFMKVLETGELTALAFSEHLKKFRPKQTILETEGEAAKSKHQKGPSGQWVDVMKRKRAIHENIINLVHEQQQSKSNNEKEEIESEISPSMEKGRKAARGSKRKPQSFKDEDHYISSIPKNQHMEAGLSVKANEDFASNRLDSAVLDLVADDGAGIQKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGMYKKWKERSHGKIALRGTNDGDSQESTSLAGSYQRGRRNFKGSKKQHAMLNAHVRSEIKGMDQIRKERQTKANRTSYIKSKSTKGKKFGKNGKRRKGK* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00737 777 Gene3D - 6 225 IPR027417 -
Lapu10g00737 777 Pfam DBP10CT (NUC160) domain 625 686 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Lapu10g00737 777 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Lapu10g00737 777 SMART ultradead3 37 244 IPR014001 -
Lapu10g00737 777 MobiDBLite consensus disorder prediction 1 20 - -
Lapu10g00737 777 MobiDBLite consensus disorder prediction 679 694 - -
Lapu10g00737 777 MobiDBLite consensus disorder prediction 737 753 - -
Lapu10g00737 777 MobiDBLite consensus disorder prediction 1 17 - -
Lapu10g00737 777 SMART helicmild6 275 356 IPR001650 -
Lapu10g00737 777 CDD SF2_C_DEAD 241 365 - -
Lapu10g00737 777 Gene3D - 237 470 IPR027417 -
Lapu10g00737 777 MobiDBLite consensus disorder prediction 552 574 - -
Lapu10g00737 777 MobiDBLite consensus disorder prediction 547 593 - -
Lapu10g00737 777 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Lapu10g00737 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Lapu10g00737 777 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Lapu10g00737 777 CDD DEADc_DDX54 18 223 IPR033517 -
Lapu10g00737 777 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Lapu10g00737 777 MobiDBLite consensus disorder prediction 759 777 - -
Lapu10g00737 777 MobiDBLite consensus disorder prediction 669 777 - -
Lapu10g00737 777 MobiDBLite consensus disorder prediction 698 713 - -
Lapu10g00737 777 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Lapu10g00737 777 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 9 690 - -
Lapu10g00737 777 SMART DBP10CT_2 625 687 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00737 Lapu-Chr10 9265409 9270542 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00737 1 389 Eukaryotic Initiation Factors Gene Family AT1G72730 30.691 1.20e-58 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00737 K14808 - gmx:100806274 1357.43