Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00706 ATGGCTCTCGCGGGAGTTGAAGTGAAGCATGTGGAGGGCGTACCGGAGGAGAATTGCTCCGCCAAGCCCACCAAGCAGGGCGAGGGTCTCCGCCACTACTATTCTCTCAACATCCACGAGCATCAGCTCCTTCTCCGTCAAAAGACGCATAACCTCAACCGTCTTGAGGCCCAGCGTAACGAGCTCAATTCCAGGGTGAGGATGCTCCGCGAAGAATTGCAGCTTCTTCAGGAGCCTGGCTCCTATGTCGGTGAGGTCGTCAAAGTGATGGGCAAGAACAAAGTCCTTGTCAAGGTCCACCCGGAAGGAAAATATGTTGTCGACATTGACAAAAGTATTGACATTACTAAGATCACTCCTTCCACTAGAGTTGCACTTCGCAATGATAGCTATGTTCTTCATTTAATTCTGCCCAGTAAAGTTGATCCGTTGGTCAATCTGATGAAAGTTGAGAAAGTTCCTGATTCTACGTATGACATGATTGGTGGTTTAGACCAGCAAATCAAAGAAATCAAAGAGGTCATCGAGCTACCAATTAAGCATCCTGAGCTCTTTGAGAGTCTTGGAATTGCACAACCAAAGGGTGTCCTGCTGTATGGGCCACCTGGTACAGGAAAAACGTTGTTGGCTAGGGCAGTGGCTCATCATACTGACTGTACGTTCATAAGGGTGTCTGGTTCTGAATTGGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTCGTTATGGCGAGGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGCATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAACGTACTATGCTGGAACTTCTCAACCAGTTGGATGGATTTGAGGCTTCAAATAAGATCAAGGTTTTGATGGCAACAAATAGGATCGATATCTTGGATCAAGCTCTCCTTAGACCTGGTCGGATTGACAGGAAGATTGAATTTCCTAACCCTAATGAAGAGTCTCGGCTGGATATTTTGAAAATCCATTCAAGGAGAATGAATTTAATGCGTGGCATCGATTTGAAGAAGATTGCTGAGAAGATGAATGGAGCGTCTGGTGCTGAACTAAAGGTGAACGTGGAAGGCCGCAACATGGGTCACCCAATCGATCTGGCCAAGTTGGATGGAACATGGCGCCTCCAGTACACTTCTGCCCCTGATGTTCTCATTCTTCTCCAAGCTGCTGCTACACTTCCTTTCTTTCAAGTTGGACAGATCTTTCAAAAATTTGAATGTCGTGATCAATCTAATGGAGGTGTTATCCGCAATGTTGTTCGATGGAGTATTCCAAATTTGTTAGAGGAACAAGAAGGTGCCACACTGCTTGTATCCGCCAAGTTTAATGTTGTATCTGTCCGAAATATATACCTTCAGTTTCAAGAGATCACAGTTCAAGATATACATATTAGTGAAGAGCTGCAGGCTTTAATAGCTCCAGCAATACTACCACGATCTTTTATAAGTCTTCAGATTTTGCAATTTCTCCGCTCTTTCAAAGCTCAAATCCCTGTGAGAGATCCAGGAAGGGAATCGGTGGGAGGACTATATTACCTTAGTTACCTGGATGATAATATGCTTTTGGGTCGTGCCGTTGGTGGAGGAGGGGTATTTGTTTTTACTAGAGCTCAATCTCTCTACTGA 1683 0.4486 MALAGVEVKHVEGVPEENCSAKPTKQGEGLRHYYSLNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKVNVEGRNMGHPIDLAKLDGTWRLQYTSAPDVLILLQAAATLPFFQVGQIFQKFECRDQSNGGVIRNVVRWSIPNLLEEQEGATLLVSAKFNVVSVRNIYLQFQEITVQDIHISEELQALIAPAILPRSFISLQILQFLRSFKAQIPVRDPGRESVGGLYYLSYLDDNMLLGRAVGGGGVFVFTRAQSLY* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00706 560 Gene3D - 40 148 IPR012340 -
Lapu10g00706 560 Gene3D - 331 375 - -
Lapu10g00706 560 Pfam ATPase family associated with various cellular activities (AAA) 196 329 IPR003959 GO:0005524|GO:0016887
Lapu10g00706 560 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 32 372 - -
Lapu10g00706 560 CDD RecA-like_PAN_like 157 328 - -
Lapu10g00706 560 SMART AAA_5 192 332 IPR003593 GO:0016887
Lapu10g00706 560 FunFam 26S protease regulatory subunit 8 44 148 - -
Lapu10g00706 560 Coils Coil 38 72 - -
Lapu10g00706 560 Pfam PAP_fibrillin 382 553 IPR006843 -
Lapu10g00706 560 FunFam 26S protease regulatory subunit 8 149 330 - -
Lapu10g00706 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 373 IPR027417 -
Lapu10g00706 560 Pfam Proteasomal ATPase OB C-terminal domain 83 138 IPR032501 -
Lapu10g00706 560 ProSitePatterns AAA-protein family signature. 300 318 IPR003960 GO:0005524|GO:0016887
Lapu10g00706 560 Gene3D - 149 330 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00706 Lapu-Chr10 8956032 8967334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00706 139 372 Calmodulin-binding Proteins AT3G56690 41.453 8.73e-50 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00706 K03066 - gmx:100776268 700.279