Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00686 ATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAGTTCGTAAGGTTGGATGATTTGGATTCGAATTTTTCGATTCCATCAAGCTCAAGTGGGATGAAAAAATTAAGATTCAATTTCGATTCTTTGCCACTTCCGGGTCGTGGAAGAAAAAGAGCATCGAAATCGTTTAGGGTAGGAGTGCAGAAGAGTTCGGATGGACTAAAAACATTTGGAAGATCACTGAAGACTGGGGTGACTACTTGGGCAGTGTTCCCTGAAGACCTTAAAGTTTCAGAGAAAAAAGTATTTGACCCTCAAGATAAGAACCTTCTGTATTGGAACAAGTTTTTTGAGATTCTATGCATTTTTTCGGTGGCTTGTGACCCCTTCTTCTTTTATCTTCCTTATTTCAACCACAAATCATTTTGCCTCGCCATGGATAACGAGCTAGCCAGTTTTGCTGTCACATTGAGATCAATATGTGATGTCATTTATCTCATCCGCATAAGTTTTCAGTTCCGCACTGCTTACATTGCGCCTTCATCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCCTACAAAGATTGCCAAGAGATATTTACGACGTTACTTCATCATTGACTTCATTTCTGTGCTGCCTATACCACAGATTGTAGTGTGGAAATATCTTTACAGAACAGGACGTGTAAAGGTATTGGAAACAAAAACGGCATTGTTGAGAATTGTGATCCTGCAATATTTTCCAAGATTTATACGTTTTTTACCTTTAGCTTCAGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCATTGCTCGGGGCTATGTACTATTTGATCTGGTATATGCTTGCTAGTCATATAACTGGTTCTTGTTGGTACTTACTAGCCATTGAACGTAATGACACCTGCTGGAAGAATGCTTGTAGAGAAGTTGAAGGGTGCGATACACATTTCTTGTACTGTGCGAATTCGAACAAGCATATGCCAGGGTATGACAGTTGGAGAAATGTCAGCGAAAGTGTTCTGAAAACTAGTTGCTATGTGGAGGATGATTCCTCACAATTTAGCTATGGAATCTTCTCTCAAGCTATAGAGTCTAATATTGTTGCTTCCATAGAAGTCTTTCCTAAATTCTGCTACTGTTTATGGTGGGGCCTTCAAAACTTAAGTACACTTGGTCAGGGGCTTCTAACCAGTACATATCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTATCCTTTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGTGACTCTGAGCAATGGATGCATCATCGTTTGCTTCCTCCAGAGCTAAGGGAAAGAGTGAGACGCTATGACCAATACAAGTGGTTGAACACTCGTGGAGTAGATGAAGAGAGCATAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGACATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAACGTTTGCTTGATGCTATATGCGAGCGGTTGAAGCCTAGTTTGTATACAGAGGGAACTTACATAGTGAGGGAAGGAGACCCAGTTAATGAGATGCACTTCATCATACGTGGGCGTCTAGAGAGTGTCACCACAGATGGTGGAAGAAGTGGGTTTTTCAACAGAGGTCTTCTAAAGGAAGCTGACTTCTGTGGAGAGGAGCTACTAACGTGGGCATTGGATCCCAAATCTGCTGCTAACTTGCCATCATCAACAAGGACGGTGAAGGCTATAAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCTTCCCAATTTAGGCACATCCACAGCAGACAAGTTCAGCACACCTTCCGTTTCTATTCACAGCAGTGGAGAACATGGGCTGCTATCTACATTCAAGCTGCATGGAGGCGGCATGGTAGGAGGAAGATGGTAGAACAACGCAAGAGGGAGGAAGAAGAATTATATGACTCTGATTATGACAACTGTCATGATTCTGCAAGAGCCTTGGTCCAGCACTCTGAACCTGCTTTTTCCTCTTCTAGACTTGGACTTGGTACAACCGTCTATGCATCTCGCTTTGCAGCAAATGCACTTCGCAGTCATAGGCTTCGTGGTTCAAGTTCCAAGGGCATGATCAAACTCCAAAAGCCCCCAGAACCTGACTTCAGTGATCTTGATGAAAACTGA 2253 0.4234 MFDSGYKSQYIGGQKEKFVRLDDLDSNFSIPSSSSGMKKLRFNFDSLPLPGRGRKRASKSFRVGVQKSSDGLKTFGRSLKTGVTTWAVFPEDLKVSEKKVFDPQDKNLLYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAMDNELASFAVTLRSICDVIYLIRISFQFRTAYIAPSSRVFGRGELVIDPTKIAKRYLRRYFIIDFISVLPIPQIVVWKYLYRTGRVKVLETKTALLRIVILQYFPRFIRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSCWYLLAIERNDTCWKNACREVEGCDTHFLYCANSNKHMPGYDSWRNVSESVLKTSCYVEDDSSQFSYGIFSQAIESNIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKEADFCGEELLTWALDPKSAANLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHGRRKMVEQRKREEEELYDSDYDNCHDSARALVQHSEPAFSSSRLGLGTTVYASRFAANALRSHRLRGSSSKGMIKLQKPPEPDFSDLDEN* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00686 750 Gene3D Helix hairpin bin 437 501 - -
Lapu10g00686 750 FunFam Cyclic nucleotide-gated ion channel 1 508 626 - -
Lapu10g00686 750 ProSiteProfiles cAMP/cGMP binding motif profile. 510 593 IPR000595 -
Lapu10g00686 750 CDD CAP_ED 510 641 IPR000595 -
Lapu10g00686 750 Gene3D - 113 435 - -
Lapu10g00686 750 MobiDBLite consensus disorder prediction 728 750 - -
Lapu10g00686 750 Pfam Cyclic nucleotide-binding domain 531 620 IPR000595 -
Lapu10g00686 750 SUPERFAMILY cAMP-binding domain-like 440 630 IPR018490 -
Lapu10g00686 750 Pfam Ion transport protein 110 437 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu10g00686 750 Gene3D Jelly Rolls 508 628 IPR014710 -
Lapu10g00686 750 ProSiteProfiles IQ motif profile. 646 675 IPR000048 GO:0005515
Lapu10g00686 750 FunFam Cyclic nucleotide-gated ion channel 1 437 501 - -
Lapu10g00686 750 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 92 744 - -
Lapu10g00686 750 SMART cnmp_10 510 641 IPR000595 -
Lapu10g00686 750 SUPERFAMILY Voltage-gated potassium channels 103 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00686 Lapu-Chr10 8843614 8847255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00686 6 744 Ion Channels AT1G15990 68.000 0.0 1010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00686 K05391 - gmx:100810453 1352.04