Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00676 ATGAGTGTGACAGGTTCATCATCTGGGCAGCCTCAATTCATTACCAGCACCGGTAACCGGAGCTTGTCAAATGCGCCGTTGATTGAGAACTCAGACTGTGATCAAATTGTTGTGCCTGATAGAACAAGCTGGAAAAATTTATTTGCGTACATGGGGCCTGGATTTCTTGTTTCCATTGCATATATCGACCCTGGAAACTTTGAGACGGATCTTCAATCAGGAGCACAATATAAATATGAGTTACTATGGATCATATTGGTGGCGTCATGTGCTGCTCTTCTGATTCAAACAATGGCTGCTAATCTTGGGGTTGTCACTGGAATGCACCTAGCTGAGCATTGTAGAGCTGAATATTCTCGAGTGCCCAACTTTATCCTTTGGGTGATTGCTGAAATTGCCATAGTGGCCTGTGACATTCCTGAAGTAATTGGGACGGCATTTGCATTGAACATGCTCTTCAACGTACCTGTTTGGATTGGTGTTCTTCTGACAGGACTCAGTACATTGGTCCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTTACAATTGCTGGTTGCTTTATGGCTGAGCTTGGGTATGCAAAGCCAGTGGCGAAAGAAGTTGTGACGGGTCTTTTTGTTCCAAAACTCCAGGGGCATGGTGCCACTGGTCTAGCAATTTCACTGCTTGGGGCAATGGTTATGCCACACAATCTTTTCCTCCACTCAGCGCTGGTGCTTTCCAGGAAAATACCCCGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTACGGTGGCCTTCCTCATAAATATTTCCGTTATTTCTGTAAGTGGTGCAGTTTGCAATTCTTCAAACTTAAGTGCTGAAGATCAAAATAATTGTCAGGATTTGGATTTGAACAAAGCTTCCTTTTTATTAAGAAATGTCTTGGGCAAATGGAGTTCGAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACCATAACAGGAACATATGCAGGGCAATACGTCATGCAGGGATTTCTTGATTTGCGACTGAAGTCATGGATTCGGAATCTGCTAACCCGTTGCTTAGCCATTGTTCCTAGTTTGATTGTTGCACTCATAGGTGGCTCTGCTGGAGCTGGGGAGCTCATCATAATTGCATCGATGATCTTATCATTTGAGCTTCCTTTTGCTCTGATCCCACTCCTCAAGTTCACTAGCAGCAAAATCAAGATGGGAGAACATGTCAACTCAATCACGATTTCGGCTGTTACTTGGATCATTGGTTCCCTCATCATGGGCATAAACGTATACTATTTATTGACTAGCTTTGTGAAGTTGCTTCTTCATGCTCACTTAAGAATTGTGACTAAGGTATTTCTGGGGATATTGGGATTTTCTGGTGTGGCACTATACATGGGAGGCATTGCGTATTTAGTGTTTCGCAAAAATAAAAAGACTACACATATTTTGAGATTTAGTACAGATCAGCAAATGGCGAATGAGCAAGGTGATGTATCAATGTATAGTCTCCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAAAAAAGGAGTCCGGCAGAATTTGATTGA 1629 0.4217 MSVTGSSSGQPQFITSTGNRSLSNAPLIENSDCDQIVVPDRTSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALLIQTMAANLGVVTGMHLAEHCRAEYSRVPNFILWVIAEIAIVACDIPEVIGTAFALNMLFNVPVWIGVLLTGLSTLVLLALQQYGVRKLEFFIAFLVFTIAGCFMAELGYAKPVAKEVVTGLFVPKLQGHGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALTVAFLINISVISVSGAVCNSSNLSAEDQNNCQDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKSWIRNLLTRCLAIVPSLIVALIGGSAGAGELIIIASMILSFELPFALIPLLKFTSSKIKMGEHVNSITISAVTWIIGSLIMGINVYYLLTSFVKLLLHAHLRIVTKVFLGILGFSGVALYMGGIAYLVFRKNKKTTHILRFSTDQQMANEQGDVSMYSLPREDIVSMQLPQKRSPAEFD* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00676 542 Hamap Divalent metal cation transporter MntH [mntH]. 39 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00676 542 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 421 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00676 542 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00676 542 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00676 542 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00676 542 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00676 542 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00676 542 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00676 542 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00676 542 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 39 498 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00676 542 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00676 542 NCBIfam Nramp family divalent metal transporter 52 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00676 Lapu-Chr10 8778924 8786105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00676 16 535 Inorganic Solute Cotransporters AT1G15960 79.310 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00676 K21398 - gmx:100815628 992.645