Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00668 ATGGATCTTCAAAGGCAAGAACCATGCCCTTCTGAAAACTTGAACATCATCACATTTTCAGATACTATGCCATGTCAACAATCTTCCATAGACACTCAAACAAAGAGGAATGATGATCAAAAACACCCACATGACTCAATTCCTCGTGTTTTACTAGATCTAAGTCTCTCCAACAAGGATTCAGGTGAGGATGACTCAAAGCCAGAACTCAACCTCCTAAATTGTTTCCATACGAATTTCTCTGAAAATTCATCAGAATCTAGTCTGGGAAATGAACTGGATCCCCGGGTTTTTTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCTCAGGCACTTGGAGGACACCAGAATGCACACAAACGTGAAAGAACTTTAGCAAGAAGAGGATACAAAGCAGGTGCAGCAGATTTTGGACACACGTACTCCAGCATGCCTTTTCTTCCTTCACATGGCTTATACAACAAATCACTTGGAATTCAGGTTCATGCTATGATTAACAAACCTTCTTATCAAACACCCTTTTTCGGGTTGTGCCGTTCCAATGGGTGGCAGAGGCAGCCTTTGGATTCACAACCAGCAATTGGAAATTTTCGTGTGGGGGCAGAAACTGAGTCATCCTTGCCTGATAGTGTTCCAAAGTTAGGCAAGTTTTCTACAAGGCTGGTGACAGAGGGATTTGGAGGTTACTGCTTTGGTAGCATTACTCATTTGAAGTCTAAACAAGAGAAGTTGCAGAAGCTTGACTTGTCCCTTAAGCTCTAA 765 0.4183 MDLQRQEPCPSENLNIITFSDTMPCQQSSIDTQTKRNDDQKHPHDSIPRVLLDLSLSNKDSGEDDSKPELNLLNCFHTNFSENSSESSLGNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAADFGHTYSSMPFLPSHGLYNKSLGIQVHAMINKPSYQTPFFGLCRSNGWQRQPLDSQPAIGNFRVGAETESSLPDSVPKLGKFSTRLVTEGFGGYCFGSITHLKSKQEKLQKLDLSLKL* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00668 254 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Lapu10g00668 254 SUPERFAMILY beta-beta-alpha zinc fingers 95 125 IPR036236 -
Lapu10g00668 254 Gene3D Classic Zinc Finger 77 137 - -
Lapu10g00668 254 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 254 IPR044246 GO:0009788
Lapu10g00668 254 MobiDBLite consensus disorder prediction 34 48 - -
Lapu10g00668 254 MobiDBLite consensus disorder prediction 26 51 - -
Lapu10g00668 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00668 Lapu-Chr10 8716920 8718088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00668 1 254 C2H2 Transcription Factor Family AT5G10970 38.489 5.54e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu10g00668 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00668 - - gmx:100816861 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00668 10 8716920 8718088 Lapu10g00668 10 8716920 8718088 ECH