Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00658 ATGATGATGAACGAAGAAATCTACTTGCACGCGCCCACCCTCCCCACCGCTAACTTTTTGCTTCCTAAACCTGAAATGGTGTTGTCTCAGTCGCGGGACTCCTCACAGAAGATTTGCTACGCAACTGCGCTTGAAGGGATCGCCGCGGTTGTTGGAGAACACGTCCTCTTCGGAACTACTTCGACGTCGTCATTGCATGTTTCGGAGATACCCAAGAAAACAGCTGGGGTGTCGGTGAACAAGAGTTACAGAGGAGTGAGGAAGAGACCGTGGGGGAGGTGGTCGGCGGAGATACGGGACCGGATCGGGCGGTGCCGCCACTGGCTGGGGACCTTTGACACGGCGGAGGAAGCGGCGCGTGCGTACGACGCGGCGGCGAGGCGACTTAGAGGTGCGAAGGCGAGGACCAACTTCAAGATACCCTCTGTGTTGCCACTTTCTCCGTCTTCGGAAGGTGTTCATGGTGGTGCCGTGAAGCCGAAAGCTGCGCGCAATAACGCTAGAAAGTGTTCCTCTGTGGAACAATTGTTCAGTGGCGTGCCTCAAGTTCGAAGAAATGATGAGGGTAGTGAGAATGGGAACGTAGAGGTGGATTTGAAGCTGGGTGTGAACTTTAGTGTTACGAGCGCTAGAATGCTGTCTCTGATGAAACTGTGCAACCAATGTTCGCTAAACCTGGAAAATTATGCAGTTGAATGGGAAGAGCTTTGTTTTGTAAGAAATGAACGTTGA 732 0.5273 MMMNEEIYLHAPTLPTANFLLPKPEMVLSQSRDSSQKICYATALEGIAAVVGEHVLFGTTSTSSLHVSEIPKKTAGVSVNKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFKIPSVLPLSPSSEGVHGGAVKPKAARNNARKCSSVEQLFSGVPQVRRNDEGSENGNVEVDLKLGVNFSVTSARMLSLMKLCNQCSLNLENYAVEWEELCFVRNER* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00658 243 Coils Coil 115 135 - -
Lapu10g00658 243 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Lapu10g00658 243 Gene3D AP2/ERF domain 81 140 IPR036955 GO:0003700|GO:0006355
Lapu10g00658 243 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Lapu10g00658 243 CDD AP2 81 140 IPR001471 GO:0003700|GO:0006355
Lapu10g00658 243 SUPERFAMILY DNA-binding domain 82 139 IPR016177 GO:0003677
Lapu10g00658 243 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Lapu10g00658 243 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Lapu10g00658 243 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 61 165 - -
Lapu10g00658 243 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Lapu10g00658 243 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00658 Lapu-Chr10 8629340 8630156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00658 45 145 AP2-EREBP Transcription Factor Family AT1G80580 65.455 5.26e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu10g00658 AP2 3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00658 - - gmx:102660200 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00658 10 8629340 8630156 Lapu10g00658 10 8629340 8630156 ECH