Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00654 TTGGCGAGTATTGTAGGGATATGTATAACCATAACCATCACTCTATTTTCCCTTTTATTTTATTTTATTTTTCTATTTATGTTTCTTTATGACTTCAATTCACACACACTGCACCGCTTCACTCTCCTCACTCCCTCACCACTAGATCCAACCTCTTTCTCTCTCTTCCCAATCCACACATCAATGGAGGAGTCAGGGGAAAATTGGCCTTCGGATTCTTATTTGGAAATAGGTGGTGACGTGAAGGATTTGTGTTTTGACGAGGAAGAATTTGCCAGTGAGGAGGATGAGGGAGATTCCTTTTCTGAGATCAAAACTATCGACAGAAAACAGAGACAACAGGAACTCACCGAGAGGTTCCTTGCACTCTCAGCCACCATACCTGGTTTCCAAAAGATGGACAAGACTTCGATCCTGGACAAAGCGAGCAACTATGTGAGACAACTTCAGAAACGAGTGAGAGAGTTGGAGCAAGAAGTTGAATCCAACAACGTTTGTGTCAGCAGCAGCAGCTCATGCGGAGTGACCAACAATGGCTATTACCATGGATCAAACCAAATTCTTCCGGAAGTCAAAGTGAGAGTGTTACAGAAGGAAGTGCTCATAATAGTCCACTGTGAGAAACAAAAAGGAATCATGCTCAAAATACTGTCGCACCTCGAAAATATCAATCTCTCTGTAGTCAACAGCAGCGTCTTGCGATTTGGAAAGTCCACACTCGACATCACAATCATTGCTCAGATGGGTGAGGGATACCAGATGGGAGTGGATGAACTAGTGAAGAGCCTGAGATTAGCGATCTTGACTCAGTAG 813 0.4342 LASIVGICITITITLFSLLFYFIFLFMFLYDFNSHTLHRFTLLTPSPLDPTSFSLFPIHTSMEESGENWPSDSYLEIGGDVKDLCFDEEEFASEEDEGDSFSEIKTIDRKQRQQELTERFLALSATIPGFQKMDKTSILDKASNYVRQLQKRVRELEQEVESNNVCVSSSSSCGVTNNGYYHGSNQILPEVKVRVLQKEVLIIVHCEKQKGIMLKILSHLENINLSVVNSSVLRFGKSTLDITIIAQMGEGYQMGVDELVKSLRLAILTQ* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00654 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 149 IPR011598 GO:0046983
Lapu10g00654 270 SMART finulus 105 155 IPR011598 GO:0046983
Lapu10g00654 270 Gene3D - 105 169 IPR036638 GO:0046983
Lapu10g00654 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 110 165 IPR036638 GO:0046983
Lapu10g00654 270 Pfam Helix-loop-helix DNA-binding domain 110 150 IPR011598 GO:0046983
Lapu10g00654 270 Coils Coil 139 166 - -
Lapu10g00654 270 PANTHER BHLH TRANSCRIPTION FACTOR 109 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00654 Lapu-Chr10 8578289 8583809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00654 107 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.520 9.43e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu10g00654 HLH 0.00017 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00654 - - vum:124835915 303.908