Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00620 ATGTTTTTACTTCATCCCTTGTTAAAAGGAGACACTCACTCACTCATCTCCATTCCTACTTCTCCTTTCTCGGATCTCTCTCACACCCTTCCTCTCTTTTCTTCTTCTCCTTCGCTTTCCCTTCACAAGTGGGAGATGGCGCAAATTCTGCTTCATGGGACTCTCCACGCCACAATCTACGAGGTTGATAAGCTCAATGCTGGTGGTGGCGGCAATTTTTTCAGCAAGCTCAAGCAAAATATTGAGGAGACTGTAGGTATTGGTAAGGGAGTTACTAAACTCTATGCAACCATTGATCTGGAGAAGGCAAGAGTAGGGAGGACTAGAATTATAGAAAATGAACATACTAATCCCAAATGGCACGAGTCTTTTCACATTTATTGTGCCCATGTGGCTTCAAATATTATATTCACTGTAAAAGATGATAATCCCATTGGGGCAACTTTAATTGGAAGAGCATATGTGCCTGTTTCTGAGGTCTTGGATGGTGAGGAAATAGATAGGTGGGTTGAAATCTTGGACACAGAGAAAAACCCAGTACAAGAGGGTTCAAAGATCCATGTGAAGCTGCAATATTTTGATGTCTCAAAAGACCGCAACTGGGCTCGAGGAATTAGAAGTCCTAAATTCCCTGGAGTTCCCTATACTTTCTTCTCACAGAGGCAAGGATGTAAGGTATTTCTGTACCAAGATGCTCATGTACCTGATAACTTTGTACCTAAAATACCTCTTACTGGAGGCAAGAATTATGAGGCTCATAGGTGTTGGGAGGATATATTTGATGCAATCACTAACGCAAAACACTTGATATACATTACTGGTTGGTCTGTTTATACTGAAATTTCCTTGGTAAGGGATTCTAGGCGGCCAAAGCCTGGTGGAGACGAAACACTTGGTGAGCTTCTGAAGAAAAAGGCAAGTGAAGGTGTTAAGGTATTGATGCTTGTTTGGGATGATAGAACATCAGTTAGTTTGTTGAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACCGCACAGTTCTTTAGTGGCACTGATGTGCACTGTGTTTTATGCCCCCGCAATCCTGATGATGGCGGGAGTATCGTTCAAGATTTGCAAATTTCTACTATGTTCACTCATCACCAGAAGATTGTGGTGGTTGACGGTGCATTGCCCGGTGGAGGAGATTCAGAGAAGCGAAGAATTGTGAGCTTTGTTGGGGGTATTGACCTCTGTGATGGGAGGTATGACACCGCCTTCCACTCACTTTTCAGAACCCTAGACACAGCACACCATGATGATTTTCATCAGCCTAACTTTCCTGGTGCTGCAATCACAAAAGGTGGTCCCCGGGAACCATGGCATGACATCCACTCCCGGCTTGAAGGACCCATAGCTTGGGATGTTTTGTTCAACTTTGAGCAGAGATGGAGAAAGCAAGGTGGGAAGGATGTACTTGCTCCACTGAGAGAGCTTGAAAATGTCATCATTCCCCCATCCCCAGTAACGTTTCCTGAAGATCATGAGACCTGGAATGTTCAGTTATTTAGATCTATTGATGGTGGGGCTGCTTTTGGGTTCCCAGATACTCCTGAAGATGCTGCCAAAGCTGGACTTGTTAGTGGGAAGGATAATATCATTGATAGAAGCATTCAAGATGCTTATATTCACGCTATTCGACGTGCTAAGAATTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCTTTTGCCTGGAGTGGTGAAGATATTAAGCCTGAAGACATTGGTGCATTGCATCTAATCCCAAAGGAACTTTCACTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTCACCGTGTATGTTGTAGTCCCTATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAAAAGAGAACAATGGAGATGATGTACAAGGACATTGTTCAGGCACTCAGAGCTAAGGGAAGCGATGAAGATCCCCGAAACTATTTGACATTCTTCTGCCTCGGCAATCGAGAGGTGAAAAAATCAGGAGAATACGAGCCTTCTGAACAACCAGATCCCGATTCAGATTATGAAAGAGCTCAAGCAGCCCGGCGTTTCATGATTTATGTTCATACCAAGATGATGATTGTTGACGATGAATACATAATCATTGGATCTGCCAACATCAACCAGAGGTCAATGGATGGGTCTAGGGACTCTGAGATTGCCATGGGTGCTTATCAGCCTTATCATTTGGCCACGAGAGAGCCGGCACGCGGCCAGGTCTATGGTTTCCGCATGTCATTATGGTATGAGCACCTTGGCATGCTTCATGACTCCTTCCTCAGGCCAGAAAGTGAAGAATGCATCAGTAAGGTGAACCAGGTTGCTGACAAATATTGGGATCTGTATTCTAGTGAGTCACTTGAGCGCGACCTTCCTGGTCACCTTCTTCGCTACCCTATTGGGGTTGCCAGTGAAGGAGATGTCACTGAGCTGCCAGGATTTGAATTCTTCCCTGACACCAAGGCTCGCATTCTTGGTGCCAAAGCTGACTACCTCCCCCCTATCCTCACTACTTAG 2565 0.4448 MFLLHPLLKGDTHSLISIPTSPFSDLSHTLPLFSSSPSLSLHKWEMAQILLHGTLHATIYEVDKLNAGGGGNFFSKLKQNIEETVGIGKGVTKLYATIDLEKARVGRTRIIENEHTNPKWHESFHIYCAHVASNIIFTVKDDNPIGATLIGRAYVPVSEVLDGEEIDRWVEILDTEKNPVQEGSKIHVKLQYFDVSKDRNWARGIRSPKFPGVPYTFFSQRQGCKVFLYQDAHVPDNFVPKIPLTGGKNYEAHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRPKPGGDETLGELLKKKASEGVKVLMLVWDDRTSVSLLKKDGLMATHDEETAQFFSGTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDGALPGGGDSEKRRIVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLAPLRELENVIIPPSPVTFPEDHETWNVQLFRSIDGGAAFGFPDTPEDAAKAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSGEDIKPEDIGALHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQKRTMEMMYKDIVQALRAKGSDEDPRNYLTFFCLGNREVKKSGEYEPSEQPDPDSDYERAQAARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGSRDSEIAMGAYQPYHLATREPARGQVYGFRMSLWYEHLGMLHDSFLRPESEECISKVNQVADKYWDLYSSESLERDLPGHLLRYPIGVASEGDVTELPGFEFFPDTKARILGAKADYLPPILTT* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00620 854 PIRSF PLD_plant 41 854 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lapu10g00620 854 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 700 727 IPR001736 GO:0003824
Lapu10g00620 854 PANTHER PHOSPHOLIPASE D 48 842 IPR015679 -
Lapu10g00620 854 Gene3D Endonuclease Chain A 244 488 - -
Lapu10g00620 854 Gene3D C2 domain 52 204 IPR035892 -
Lapu10g00620 854 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 51 195 IPR035892 -
Lapu10g00620 854 SMART C2_3c 54 169 IPR000008 -
Lapu10g00620 854 CDD C2_plant_PLD 47 193 - -
Lapu10g00620 854 Pfam Phospholipase D C terminal 773 844 IPR024632 -
Lapu10g00620 854 SMART pld_4 371 410 IPR001736 GO:0003824
Lapu10g00620 854 SMART pld_4 700 727 IPR001736 GO:0003824
Lapu10g00620 854 FunFam Phospholipase D 513 746 - -
Lapu10g00620 854 Gene3D Endonuclease Chain A 525 745 - -
Lapu10g00620 854 Pfam C2 domain 54 172 IPR000008 -
Lapu10g00620 854 CDD PLDc_pPLDalpha_2 538 747 - -
Lapu10g00620 854 ProSiteProfiles C2 domain profile. 35 170 IPR000008 -
Lapu10g00620 854 Pfam Phospholipase D Active site motif 371 410 IPR001736 GO:0003824
Lapu10g00620 854 Pfam Phospholipase D Active site motif 701 727 IPR001736 GO:0003824
Lapu10g00620 854 FunFam Phospholipase D delta 246 490 - -
Lapu10g00620 854 SUPERFAMILY Phospholipase D/nuclease 499 784 - -
Lapu10g00620 854 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 371 410 IPR001736 GO:0003824
Lapu10g00620 854 SUPERFAMILY Phospholipase D/nuclease 197 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00620 Lapu-Chr10 8324641 8329437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00620 46 854 Phospholipase D Gene Family (Wang group) AT3G15730 82.222 0.0 1424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00620 K01115 - gmx:100786410 1585.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01888 9 33683634 33687751 Lapu10g00620 10 8324641 8329437 ECH
Lapu10g00620 10 8324641 8329437 Lapu10g00620 10 8324641 8329437 ECH