Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00617 ATGGGGGAATTGAAGGACACCGAGGCTTACGAGGAAGAGCTTCTCGATTACGAAGAAGAAGATGAGAAAGCTCCCGATTCTGCAAAGCCCGCCGAATCTGGCAAGAAGGGTTATGTTGGCATCCATAGTTCGGGCTTTCGAGACTTCCTGTTGAAGCCAGAGCTTCTGCGAGCCATTGTAGATTCAGGATTTGAGCATCCTTCAGAAGGCAAGATTTTGCATAAGCTCTATTTGAAGCTACCAAAAAAAGCTTTTGTTGTGCAACATGAATGCATCCCTCAAGCAATCCTAGGAATGGATGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACTGCAGTTTTTGTTCTTTCTACACTTCAGCAAGTTGATCCTGTTCCTGGTCAAGTTGCAGCTCTTGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGCCATGAATTTGAGAGGTTCAGCACATATCTTCCTGATATAAAGGCTGCTGTTTTCTATGGTGGCGTCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCTCATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGGCTAGAGATAAGGACCTTGGTTTAAAGAACGTGAGGCATTTTATACTTGATGAGTGCGACAAGATGCTTGAATCACTAGATATGAGAAGAGATGTCCAAGAGATTTTCAAATTGACCCCTCATGATAAACAAGTGATGATGTTTTCGGCTACACTTAGTAAAGAGATTCGACCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAAATCTATGTAGATGATGAGGCCAAGTTGACACTTCATGGTCTTGTCCAGCACTACATCAAATTGCAAGAGTCAGAGAAGAATCGGAAGTTGAATGATCTTCTTGATGCTCTGGACTTCAACCAAGTAGTTATTTTTGTCAAGAGTGTTAGCAGAGCAGCAGAGTTGAACAAGTTGCTTGTGGAATGTAACTTCCCATCCATCTGCATACATTCTGCAATGTCACAGGAAGAGAGATTGAAACGATACAAAGGCTTCAAGGAAGGGAAGCAAAGGATTCTCGTGGCAACCGACTTAGTAGGGAGGGGGATTGACATAGAACGTGTTAATATAGTTATTAATTATGACATGCCTGATTCTGCTGATACTTACTTGCACAGGGTGGGAAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACTTTTGTGTCCTCCACTGCCGATTCTGAAGTTCTTAATCAGGTGCAATCTAGGTTTGAAGTTGATATTAAGGAGCTACCTGAACAAATTGACACTTCGACATATATGCCAAACTGA 1329 0.4221 MGELKDTEAYEEELLDYEEEDEKAPDSAKPAESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKILHKLYLKLPKKAFVVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTYMPN* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00617 442 CDD SF2_C_DEAD 278 407 - -
Lapu10g00617 442 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 43 416 - -
Lapu10g00617 442 Pfam DEAD/DEAH box helicase 87 251 IPR011545 GO:0003676|GO:0005524
Lapu10g00617 442 CDD DEADc_DDX39 43 267 - -
Lapu10g00617 442 SMART ultradead3 80 281 IPR014001 -
Lapu10g00617 442 Pfam Helicase conserved C-terminal domain 291 398 IPR001650 -
Lapu10g00617 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 412 IPR027417 -
Lapu10g00617 442 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 92 265 IPR014001 -
Lapu10g00617 442 Gene3D - 274 442 IPR027417 -
Lapu10g00617 442 SMART helicmild6 317 398 IPR001650 -
Lapu10g00617 442 FunFam DEAD-box ATP-dependent RNA helicase 274 442 - -
Lapu10g00617 442 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 293 438 IPR001650 -
Lapu10g00617 442 FunFam DEAD-box ATP-dependent RNA helicase 56-like 32 267 - -
Lapu10g00617 442 Gene3D - 40 273 IPR027417 -
Lapu10g00617 442 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00617 Lapu-Chr10 8298080 8302932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00617 1 442 Eukaryotic Initiation Factors Gene Family AT5G11200 79.794 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00617 K12812 - gmx:100799082 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00617 10 8298080 8302932 Lapu10g00617 10 8298080 8302932 ECH