Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00589 ATGGTTGGAGGTTCCTTGGCAGGGTTGCAAGAGCACCTCAAATTAGCCCGAGACTACGCTGTGGAAGGGCTCTACGACACCTCCATCATCTTCTTCGACGGTGCCCTTGCCCAGATCAACAAACACCTAAGCACCGTAGACGACCCTTTAATTCGAGCAAAATGGATGAATGTGAAGAAAGCGCTTTCGGAAGAAACCGAAGTTGTGAAACAGTTAGATGCAGAGAGAAGAGCTTTCAAAGAAAACCCCATTGGAAGACGCGCCGTTTCGCCTCCCATTTCTGCCAAGTCCTCGTCTTTTGTTTTTCAGCCGTTGGATGAGTACCCCACTTCATCAAGCGGTCCTGGTCCTGTTGATGATCCTGATGTATGGCGGCCACCCAGTAGGGATACCAGTCGGAGACCTGCCAGGTCCGGTCAAGTGGGTACCCGCAAATCTCCCCAAGATGGAGCCTGGGCGCGAGGTTCTACTACTAGAAGTGGTGCAACTGGGCGTGGTGGTGCTAAAGGTGGTGCTACTAGTAGGGTTAACTCGGGGACACGAGCATCCGCTACTGGAAAGAAAGGCAATGTTTCTGGAAAGTCTACCAAGACGGATACTGCTGCTGTAACTAATGGACAAAATGGGGATGCTGAAGATGGTAAGTCAAAGAAGGGTCAATATGAAGGTCCTGATCCTGAATTGGCTGCAATGCTTGAAAGGGACGTGTTAGAAACCTCTCCTGGAGTTAGATGGGATGATGTTGCTGGGCTTACAGAGGCAAAGAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCTTGTGGATGCCTGAATACTTCCAGGGAATCAGGAGACCTTGGAAAGGTGTCCTCATGTTTGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTATCCTCTGCAACTTTGGCTTCTAAATGGCGTGGTGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATATTTATTGACGAAATTGATTCTCTATGCAATGCAAGGGGGGCATCTGGGGAGCATGAATCATCTAGAAGGGTGAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAGTGCTACAAATGAAGATGGTAGTCGTAAAATAGTAATGGTTTTGGCTGCTACTAACTTCCCATGGGATATAGATGAGGCACTAAGGAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGTCTCGTAAAGAGCTGATCCGGATAAATTTGAAGACTGTTGAGGCAAGTTGTGATGTGGCGGCTGATGTCAATATAGATGAAGTGGCTCGCCGGACAGAGGGCTACAGTGGAGATGATTTAACAAATGTCTGTCGTGACGCGTCCTTGAATGGTATGAGGCGAAAGATAGCAGGAAAGACTCGTGACGAAATCAAGAACATGTCCAAGGATGAGATTTCAAAGGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCCGACATTGAACGTCACGAGAAGTGGTTTACCGAGTTTGGATCAGCATAA 1605 0.4729 MVGGSLAGLQEHLKLARDYAVEGLYDTSIIFFDGALAQINKHLSTVDDPLIRAKWMNVKKALSEETEVVKQLDAERRAFKENPIGRRAVSPPISAKSSSFVFQPLDEYPTSSSGPGPVDDPDVWRPPSRDTSRRPARSGQVGTRKSPQDGAWARGSTTRSGATGRGGAKGGATSRVNSGTRASATGKKGNVSGKSTKTDTAAVTNGQNGDAEDGKSKKGQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEASCDVAADVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFTEFGSA* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00589 534 CDD Kp60-NTD 7 75 - -
Lapu10g00589 534 FunFam Katanin p60 ATPase-containing subunit A1 240 408 - -
Lapu10g00589 534 Gene3D - 4 80 - -
Lapu10g00589 534 SMART AAA_5 278 421 IPR003593 GO:0016887
Lapu10g00589 534 ProSitePatterns AAA-protein family signature. 391 410 IPR003960 GO:0005524|GO:0016887
Lapu10g00589 534 Pfam ATPase family associated with various cellular activities (AAA) 282 419 IPR003959 GO:0005524|GO:0016887
Lapu10g00589 534 MobiDBLite consensus disorder prediction 104 224 - -
Lapu10g00589 534 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 534 IPR028596 GO:0008017|GO:0008568|GO:0051013
Lapu10g00589 534 Pfam Vps4 C terminal oligomerisation domain 487 532 IPR015415 -
Lapu10g00589 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 530 IPR027417 -
Lapu10g00589 534 PANTHER AAA DOMAIN-CONTAINING 25 533 - -
Lapu10g00589 534 Pfam AAA+ lid domain 445 486 IPR041569 -
Lapu10g00589 534 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Lapu10g00589 534 MobiDBLite consensus disorder prediction 133 163 - -
Lapu10g00589 534 FunFam Katanin p60 ATPase-containing subunit A1 420 510 - -
Lapu10g00589 534 Gene3D - 420 510 - -
Lapu10g00589 534 MobiDBLite consensus disorder prediction 173 210 - -
Lapu10g00589 534 Gene3D - 240 525 IPR027417 -
Lapu10g00589 534 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00589 Lapu-Chr10 8126257 8131405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00589 203 526 Calmodulin-binding Proteins AT3G56690 36.842 1.27e-49 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00589 K07767 - gmx:100787634 944.11