Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu10g00587 | ATGGCCAAAGAAGGTCTTGGACTTGAAATCACGGAGCTGAGATTGGGTCTACCTGATGCCGAGCATGTGAGTGTGGCTAACAAGATCAGTGAGAAGAAGAATAAGAGGGTGTTCTCTGAGATTGATGGAGTTGGAGATGAAAACAGCTCCTCCGGCGGCAGCGAGAGGAAAATGGAGAACAAGAATCAAGTGGTGGGGTGGCCTCCGGTGTGCTCCTACAGGAAGAAGAACAGTGTGAATGAAGCTTCAAAAATGTACGTTAAGGTTAGCATGGATGGTGCTCCCTTCTTGCGTAAAATGGATCTGGCTATGCACAAGGGATACTCCGATTTAGCCTTCGCTTTGGAGAAACTCTTTGGTTGCTATGGAATGGTGGAAGCATTGAAGAATGCGGAAAATAGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCATGGGAAATGTTTATGGAGTCATGCAAGAGGCTGAGGATTATGAAGAGAGCAGATGCAAAGGGTTTCGGTTTGCAACCAAAAGGATCTTTAAAGGGATTCATAGAAAGCGTGGGAAAGTGA | 582 | 0.4622 | MAKEGLGLEITELRLGLPDAEHVSVANKISEKKNKRVFSEIDGVGDENSSSGGSERKMENKNQVVGWPPVCSYRKKNSVNEASKMYVKVSMDGAPFLRKMDLAMHKGYSDLAFALEKLFGCYGMVEALKNAENSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFGLQPKGSLKGFIESVGK* | 194 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu10g00587 | 193 | ProSiteProfiles | PB1 domain profile. | 84 | 172 | IPR000270 | GO:0005515 | |
Lapu10g00587 | 193 | Pfam | AUX/IAA family | 51 | 176 | IPR033389 | - | |
Lapu10g00587 | 193 | MobiDBLite | consensus disorder prediction | 41 | 60 | - | - | |
Lapu10g00587 | 193 | Gene3D | - | 78 | 180 | - | - | |
Lapu10g00587 | 193 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA17 | 7 | 173 | IPR003311 | GO:0005634|GO:0006355 | |
Lapu10g00587 | 193 | SUPERFAMILY | CAD & PB1 domains | 77 | 169 | - | - | |
Lapu10g00587 | 193 | MobiDBLite | consensus disorder prediction | 44 | 58 | - | - | |
Lapu10g00587 | 193 | FunFam | Auxin-responsive protein | 79 | 180 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu10g00587 | Lapu-Chr10 | 8100643 | 8104145 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu10g00587 | 80 | 191 | B3 DNA Binding Superfamily | AT4G23980 | 32.143 | 1.10e-10 | 58.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | AUX or IAA | Lapu10g00587 | AUX_IAA | 1.9e-43 | CL0072 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu10g00587 | K14484 | - | gmx:547784 | 338.191 |