Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00587 ATGGCCAAAGAAGGTCTTGGACTTGAAATCACGGAGCTGAGATTGGGTCTACCTGATGCCGAGCATGTGAGTGTGGCTAACAAGATCAGTGAGAAGAAGAATAAGAGGGTGTTCTCTGAGATTGATGGAGTTGGAGATGAAAACAGCTCCTCCGGCGGCAGCGAGAGGAAAATGGAGAACAAGAATCAAGTGGTGGGGTGGCCTCCGGTGTGCTCCTACAGGAAGAAGAACAGTGTGAATGAAGCTTCAAAAATGTACGTTAAGGTTAGCATGGATGGTGCTCCCTTCTTGCGTAAAATGGATCTGGCTATGCACAAGGGATACTCCGATTTAGCCTTCGCTTTGGAGAAACTCTTTGGTTGCTATGGAATGGTGGAAGCATTGAAGAATGCGGAAAATAGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCATGGGAAATGTTTATGGAGTCATGCAAGAGGCTGAGGATTATGAAGAGAGCAGATGCAAAGGGTTTCGGTTTGCAACCAAAAGGATCTTTAAAGGGATTCATAGAAAGCGTGGGAAAGTGA 582 0.4622 MAKEGLGLEITELRLGLPDAEHVSVANKISEKKNKRVFSEIDGVGDENSSSGGSERKMENKNQVVGWPPVCSYRKKNSVNEASKMYVKVSMDGAPFLRKMDLAMHKGYSDLAFALEKLFGCYGMVEALKNAENSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFGLQPKGSLKGFIESVGK* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00587 193 ProSiteProfiles PB1 domain profile. 84 172 IPR000270 GO:0005515
Lapu10g00587 193 Pfam AUX/IAA family 51 176 IPR033389 -
Lapu10g00587 193 MobiDBLite consensus disorder prediction 41 60 - -
Lapu10g00587 193 Gene3D - 78 180 - -
Lapu10g00587 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 173 IPR003311 GO:0005634|GO:0006355
Lapu10g00587 193 SUPERFAMILY CAD & PB1 domains 77 169 - -
Lapu10g00587 193 MobiDBLite consensus disorder prediction 44 58 - -
Lapu10g00587 193 FunFam Auxin-responsive protein 79 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00587 Lapu-Chr10 8100643 8104145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00587 80 191 B3 DNA Binding Superfamily AT4G23980 32.143 1.10e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lapu10g00587 AUX_IAA 1.9e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00587 K14484 - gmx:547784 338.191