Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00577 ATGAACAAAAACCTTGTCCTGAATGAGCCTGAAACCAAAATGTCAAAGAAAATCTCAAAATCCCTCAGAGGCTATCTCTCCAAAATCAAACCCTCCCAACGTTCCATGATTCAATTATCCTCTAAGAAATGGGTCCTCAAAGGGTGCAAACATCCTAGGACTCCTTCTCTCGACATGGACAACAACAAAAACATGGTTACCACCAAGGCCAAGGACGACGAAGCCATGTTAGCAGATATTGATCGCTTTCTCATTGAGAATTTCAAGAACCTATTCCTCGACGACCATGAAGAAACCACCACCAACAATGAATCCAAAGAGCAAAAATCTCTCAAACTAGACTCTATCAGATTTGACTCTTCTACAAGGTTCGATGAGTCGCCACTGAACCTCTTCACAGACACAACAACCGAAGCAGGATCCAGTTTGATCATGTCTGAGAGTGAGGGTGCGGATGAGCAAGCGACGGTTCCAAGTAATTGTGTGGTGGTGTTGGCCAACTCCGCCAGACCCAATGAGGATTTCCGCCGGTCCATGGAGGGCATGCTTGAAGCAAGATTGAAGAAGAGTGAAAAGGTGGATTGGGACTTCATGCAGGAGCTTTTGTTCTGTCACATGAATCTGAACCAGAAGAAGTGGCACAAGTTCATCCTCAGCGCCTTCGTGGACGTGGCCACCACCATGCGCCAGCCACCGGAGATTTCACCGGCGAAGCCCCAGCCGCCGCAGAGCGTTCGGACTGTTAGGATCGGAAGGGAGGTGCGAAAGAAGACAAAGGAAGCAATCACCTTGGAATTTGGGTCGCCCTAA 810 0.4815 MNKNLVLNEPETKMSKKISKSLRGYLSKIKPSQRSMIQLSSKKWVLKGCKHPRTPSLDMDNNKNMVTTKAKDDEAMLADIDRFLIENFKNLFLDDHEETTTNNESKEQKSLKLDSIRFDSSTRFDESPLNLFTDTTTEAGSSLIMSESEGADEQATVPSNCVVVLANSARPNEDFRRSMEGMLEARLKKSEKVDWDFMQELLFCHMNLNQKKWHKFILSAFVDVATTMRQPPEISPAKPQPPQSVRTVRIGREVRKKTKEAITLEFGSP* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00577 269 NCBIfam uncharacterized plant-specific domain TIGR01568 162 228 IPR006458 -
Lapu10g00577 269 Pfam Transcriptional repressor, ovate 168 227 IPR006458 -
Lapu10g00577 269 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 68 225 IPR038933 GO:0045892
Lapu10g00577 269 ProSiteProfiles OVATE domain profile. 164 227 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00577 Lapu-Chr10 7992176 7993143 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lapu10g00577 Ovate 8.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00577 - - gmx:100777653 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00577 10 7992176 7993143 Lapu10g00577 10 7992176 7993143 ECH
Lapu5g00144 5 1212381 1213637 Lapu10g00577 10 7992176 7993143 PCT