Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00573 ATGGATTTCTGGCCAGAATTTCTTGCAAGCAGTTCGGGAAGAGAGTTTGTAGCAGGTGGATTTGGAGGCATCGCTGGTATAATTTCAGGTTATCCACTTGACACTCTCCGAATCAGATTACAGAACACAAAAAATGGCTCTGCTTTCACCATCTTTAGGCACATGGTGTTTAGGGAAGGACCAACTTCTTTGTACCGCGGCATGGCCGCACCATTACTCTCTGTTACTTTTCAGCAGAATGCAATGGTTTTCCAAACGTACGCGGTTCTGTCAAGGGCATTTGACTCGTCCGTTTCTCCTAAAGACCCTGCTTCCTACAAGGGTATTGCATTAGGAGGAACTGGTACTGGAGCACTCCAAAGTCTATTACTTTCCCCTGTAGAGTTGATCAAAATTCGACTTCAGTTGCAGAACGCAGCGCAGATGACAGAATCATCAAAAGGGCCTATGAGGCTCGCTAAAAACATTTGGAGAAAGGAAGGCCTTCGAGGCATTTATCGAGGACTTGGTGTCACTTTGATGAGGGATGGACCCTCTCATGGTTTATACTTCTGGACATACGAATACATGAGGGAACTATTTCACCCCGGTTGCAGAAAAACTGGTGAAGAAAGTTTGATGACTATGTTAGTAGCGGGAGGATTAGCAGGGGTGGCTAGTTGGATTAGTTGCTACCCTTTTGATGTTGTAAAGACTAGACTACAGGCTCAGACACCCTCTTCTCTCAAGTACAAAGGCATCGTAGATTGTTTCAGAAAGAGTGTTAACGAAGAAGGATACAGTGTTCTATGGCGGGGTCTAGGAACTGCAGTTACCAGAGCTTTCCTAGTAAACGGGGCCATATTTTCTGCTTATGAGATTACACTAAGATTACTGTTTAACAATGGAAGTATTCACATGAAAGAAACTATTTAG 915 0.4404 MDFWPEFLASSSGREFVAGGFGGIAGIISGYPLDTLRIRLQNTKNGSAFTIFRHMVFREGPTSLYRGMAAPLLSVTFQQNAMVFQTYAVLSRAFDSSVSPKDPASYKGIALGGTGTGALQSLLLSPVELIKIRLQLQNAAQMTESSKGPMRLAKNIWRKEGLRGIYRGLGVTLMRDGPSHGLYFWTYEYMRELFHPGCRKTGEESLMTMLVAGGLAGVASWISCYPFDVVKTRLQAQTPSSLKYKGIVDCFRKSVNEEGYSVLWRGLGTAVTRAFLVNGAIFSAYEITLRLLFNNGSIHMKETI* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00573 304 PRINTS Mitochondrial carrier protein signature 119 137 IPR002067 GO:0055085
Lapu10g00573 304 PRINTS Mitochondrial carrier protein signature 166 184 IPR002067 GO:0055085
Lapu10g00573 304 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Lapu10g00573 304 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Lapu10g00573 304 PRINTS Mitochondrial carrier protein signature 213 235 IPR002067 GO:0055085
Lapu10g00573 304 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 93 IPR018108 -
Lapu10g00573 304 FunFam Mitochondrial arginine transporter BAC2 11 302 - -
Lapu10g00573 304 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 291 IPR018108 -
Lapu10g00573 304 SUPERFAMILY Mitochondrial carrier 14 286 IPR023395 -
Lapu10g00573 304 Gene3D Mitochondrial carrier domain 13 300 IPR023395 -
Lapu10g00573 304 Pfam Mitochondrial carrier protein 12 94 IPR018108 -
Lapu10g00573 304 Pfam Mitochondrial carrier protein 205 295 IPR018108 -
Lapu10g00573 304 Pfam Mitochondrial carrier protein 111 195 IPR018108 -
Lapu10g00573 304 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 193 IPR018108 -
Lapu10g00573 304 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00573 Lapu-Chr10 7955263 7957554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00573 1 295 Antiporters AT1G79900 70.946 6.31e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00573 K15109 - gmx:100812056 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00573 10 7955263 7957554 Lapu10g00573 10 7955263 7957554 ECH