Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00568 ATGTCGTCTCCGTCGCCGGCGGAGACTCCTTCCGACACTAACTCCACCTCCTCTCCTCCCCCAGAGGAAACATCTCGTGTACCTAACACCACTGTCTCCCCTCCTCCGCCTCCCAACACCACCACTGCCGCCGTTACTCCTCCTCCGCCCCCGTTAGCCGCAGCTCCGAGTAGTCCTGGTGGCGGTGGGTTGTCGCCGGGTACATTGAGTGGAATAATTATAGGGGCCGTGTTAGGTGCAGTAGGTATGCTTATAGTTGGGGGCATTTTCTTTTGCGTCTATAGGAATTGGAAAAAGAAGAGAAGCCAGAACAACTACTCTCAACAACCAAAAGCTGACGTGGCTGGTGGCACCCTTCAGAATTGGCAAGACAGTGTTTCTCCAACAACAGATGGTAAAGTAGGGTTGCCGCCCAACGCTGCTCCTGGGGGTTTAGTGAATCAGAAACAGTCATCCGCCACACCCCCTGTCAATTCTTCAGGCACTGGCAGTAGTTTGGGGTCCGAGAAGGTGAAGCTTTCACCTGGCATTTCCTTGGCGCTATCTCAAAGCACTTTTACACGCGATGAATTAGCTATGGCAACAGATGGATTCTCCAACTCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGAGTTCTCCCAAATGGGAAAATTGTTGCAGTCAAGCAGTTGAAATCTGAGAGTCGACAAGGAGAGCGTGAGTTCCATGCAGAAGTCGAGGTCATTAGCCGTGTGCATCACAGACACCTTGTTTCCCTAGTTGGTTATTGCATATCAGACAACCAGAAGATGCTTGTCTACGAGTATGTGCCAAATAATACTCTAGAATTTCATTTGCATGGAAAGGACAGACCATCTATGGACTGGTCGACAAGGATGAAGATTGCTATAGGATCTGCGAAAGGATTGGCATATCTGCATGAGGACTGTAATCCCAAAATCATACACCGAGACATCAAGGCATCTAACATTCTTATTGATGATAGTTTTGAGGCTAAGGTTGCAGATTTTGGACTTGCAAAATTTTCATCGGACACAGAAACCCATGTTTCTACTCGAGTGATGGGAACTTTTGGATACATGGCTCCGGAATATGCTGCTAGTGGGAAACTAACTGAAAAGTCAGATGTTTTCTCCTTTGGTGTTGTGCTTTTGGAATTGATCACTGGACGGAAGCCTGTTGATAAAACTCAACCCTTCTTAGATGACAGCATGGTTGAATGGGCTAGGCCTTTACTGTCTCAAGCTTTTGAGAATGGAAACTTTGATGGACTTGTTGATCCAAAGTTGCAGAAGAATTACAATCATGAAGAGATGATCCGAATGACTGCTTGTGCTGCAAGTTGTGTGCGCCACTCAGCCAGGCTACGGCCTCGAATGAGTCAGGTTGTTCGAGCTCTGGAAGGAAATATTTCTCTAGAAGATCTAAATGAAGGGAGCGCACCTGGACATAGCAGAGTTTTTGGTTCCTTTGAGAGTTCTAGCTATGATAGTGTCCAATACAGTGAAGACATGAAGAACTTCAGGAAGCTGGCACTGGAAAGCCAAGAGCTAGGTATTAATGAGTGCAGTGGTCCCAGCAGTGATTATGGTCGACATCCATCTGTCTCTACCAGTTCGGGACAGCAAAATACGCAGGAAATTGAATTGGGTAACGTGAAGGGTGGCAACCATGATTCTGCAAGGAGCTCTTGA 1707 0.471 MSSPSPAETPSDTNSTSSPPPEETSRVPNTTVSPPPPPNTTTAAVTPPPPPLAAAPSSPGGGGLSPGTLSGIIIGAVLGAVGMLIVGGIFFCVYRNWKKKRSQNNYSQQPKADVAGGTLQNWQDSVSPTTDGKVGLPPNAAPGGLVNQKQSSATPPVNSSGTGSSLGSEKVKLSPGISLALSQSTFTRDELAMATDGFSNSNLLGQGGFGYVHKGVLPNGKIVAVKQLKSESRQGEREFHAEVEVISRVHHRHLVSLVGYCISDNQKMLVYEYVPNNTLEFHLHGKDRPSMDWSTRMKIAIGSAKGLAYLHEDCNPKIIHRDIKASNILIDDSFEAKVADFGLAKFSSDTETHVSTRVMGTFGYMAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKTQPFLDDSMVEWARPLLSQAFENGNFDGLVDPKLQKNYNHEEMIRMTACAASCVRHSARLRPRMSQVVRALEGNISLEDLNEGSAPGHSRVFGSFESSSYDSVQYSEDMKNFRKLALESQELGINECSGPSSDYGRHPSVSTSSGQQNTQEIELGNVKGGNHDSARSS* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00568 568 SUPERFAMILY Protein kinase-like (PK-like) 174 471 IPR011009 -
Lapu10g00568 568 MobiDBLite consensus disorder prediction 144 169 - -
Lapu10g00568 568 FunFam Proline-rich receptor-like protein kinase PERK8 170 273 - -
Lapu10g00568 568 Gene3D Transferase(Phosphotransferase) domain 1 274 483 - -
Lapu10g00568 568 MobiDBLite consensus disorder prediction 1 63 - -
Lapu10g00568 568 MobiDBLite consensus disorder prediction 119 169 - -
Lapu10g00568 568 Pfam Protein tyrosine and serine/threonine kinase 201 471 IPR001245 GO:0004672|GO:0006468
Lapu10g00568 568 SMART serkin_6 198 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00568 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 318 330 IPR008271 GO:0004672|GO:0006468
Lapu10g00568 568 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 84 520 IPR047117 -
Lapu10g00568 568 MobiDBLite consensus disorder prediction 524 568 - -
Lapu10g00568 568 FunFam Proline-rich receptor-like protein kinase PERK1 274 482 - -
Lapu10g00568 568 MobiDBLite consensus disorder prediction 1 29 - -
Lapu10g00568 568 ProSiteProfiles Protein kinase domain profile. 198 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00568 568 Gene3D Phosphorylase Kinase; domain 1 164 273 - -
Lapu10g00568 568 ProSitePatterns Protein kinases ATP-binding region signature. 204 226 IPR017441 GO:0005524
Lapu10g00568 568 MobiDBLite consensus disorder prediction 30 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00568 Lapu-Chr10 7915518 7920590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00568 14 517 Trihelix Transcription Factor Family AT1G70460 50.674 5.30e-161 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lapu10g00568 PK_Tyr_Ser-Thr 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00568 - - gmx:100788350 850.892