Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00562 ATGGGAGTTAACATGTCAAACACACCACCTCACACCAAAGACTTGTTTTCCTCTCCAGCTCTCTCTCTTAGCCTTGCTGGGATTTTCCGGCATGCTGAGGAGGCGGTGGCGGCGACGTCCGGCATGGTGGTGGACGGCGATGAGGTCCGGCGAGAGGACACTGTTGAGATTAGCAGTGACAACTCAGGACCTGTGAGATCCAGGTCAGAAGAAGACTTTGATGGAGAAGGTGCTCACGAGGATGACGATGATGAGAACGATGATGGTGGTGATAAGAGTAAGAAGAAGAAGAGGAAGTATCACAGACACACCGTTGAGCAGATCAGAGAAATGGAAGCGCTTTTCAAGGAATCACCGCATCCTGATGAAAAGCAGAGGCAACAACTCAGCAAGCAACTTGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAACGCCATGAAAACTCATTATTGAAGACAGAATTAGACAAACTGAGGGAGGAAAACAAGATCATGCGGGAGACCATCAACAAATCTTGTTGTCCCAATTGTGGCATGGTGACGGCTACCTTAGATGCTTCCATGTCCACTGAAGAAAAACAACTTCTTCTTGAAAATGTCAAACTCAAAGCTGAGGTAGAGAAACTCCGAGCAACTTTGGGAAAATGTTCACCAGCGTCTCCTACATCTTCTTCTGGTCATGACGAAGAAGAGAACAGAAGCTCTTTGGACTTCTACAATGGAATTTTTGGGCTCGAGAAATCAAGGATAATGGAATTAGTTAACCGGGCGACGAAAGAGCTCATAAAGATGGCAAACATAGGGGAACCATTGTGGGTTCGTAGCGTTGAAACAGGTCGTGAAATACTTAACTATGATGAATATGTGAAGGAGTTCACAGTTGAAAATTCGTGCAGTGATAAGCCAAAGACATTCATCGAAGCCTCAAGAGACTCCGAGGTTGTTTTTATGGATCTCCCTCATCTGCTCCAGACCTTTCTAGATGTGAATCAATGGAAGGAAATGTTTCCGTGCTTGATATCGAAGGCTGCAACTGTTGATGTTATATGCAATGGTGAAGGTTCCAACAGAAATGGTGCAGTGCAATTGATGTTTGCTGAGCTGCAAATGCTCACTCCAATGGTGCCCACCAGAGAAGTGTACTTTGTGAGGTGCTGCAAACAGTTGAGTGATGAGCAGTGGGCAATAATTGATGTATCTATAGACAAAGTAGAAGACAACATTGACGCATCCCTCGTGAAATGCAGAAAACGCCCATCTGGTTGTATTATTGAGGATAAATCAAACGGCCATTGCAAGGTGATATGGGTGGAGCACTTGGAGTGCCAGAAGAGCACAATCCATACATTGTATCGAACCATTGTCAACAGTGGTCTAGCTTTTGGGGCAAGGCATTGGATAGCCACACTACAACTTCAATGCGAACGTCTAGTTTTTAACATGGCAACAAATGTTCCTACAAAGGATTCAACTGGTGTTGCAACGTTGGCTGCGAGGAAAAGCATTTTAAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAGTTGGAGCATCAAGTTTCCATACATGGACCAAGTTCCCGAGTAAAACAGGAGAAGACATAAGGATTAGCTCTAGGAAGAACTTGAATGACCCTGGTGAACCTCTTGGGCTTATCTTGGCTGCGGTTTCTTCTGTATGGCTTCCTGTCTCTCCTAATGTGTTGTTTGGTTTCCTGAGGGATGAAGCTCGTCGAAGTGAGTGGGAGATGATGTCCAGTGGTGGGTCAGTACAGTCGATTGCAAATTTAGCTAAAGGAAAAGACCGAGGCAATGCTGTAAACATCCAAAAAATACAATCTAAAGATAACAGTGTGTGGGTACTGCAAGATAGCTGCACAAGTGCTTATGAGTCAATGGTGGCATATGCTCCTGTGGAGTTTGCTGGTCTCCAGTCTGTGCTGACAGGATGTGATTCAAGTAATCTTGCCATTTTGCCATCAGGATTCTCAATTCTTCCCGATGGGATTGAGGGAAGGCCATTGGTGATTAGGTCAAGACAAGAAGAAAAAGAAACAGAAGGAGGATCTTTAGTTACAATGGTATTCCAGATGCTTGTGAATGCTTCTCCTACAACCAAGTTAACAATGGAATCTGTGGAATCGGCTAATAATCTCGTGTCTTGTACATTAAGAAATATTAGAACAAGTTTACGGTGTGAAGATGGTTAG 2250 0.444 MGVNMSNTPPHTKDLFSSPALSLSLAGIFRHAEEAVAATSGMVVDGDEVRREDTVEISSDNSGPVRSRSEEDFDGEGAHEDDDDENDDGGDKSKKKKRKYHRHTVEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTELDKLREENKIMRETINKSCCPNCGMVTATLDASMSTEEKQLLLENVKLKAEVEKLRATLGKCSPASPTSSSGHDEEENRSSLDFYNGIFGLEKSRIMELVNRATKELIKMANIGEPLWVRSVETGREILNYDEYVKEFTVENSCSDKPKTFIEASRDSEVVFMDLPHLLQTFLDVNQWKEMFPCLISKAATVDVICNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSDEQWAIIDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTIHTLYRTIVNSGLAFGARHWIATLQLQCERLVFNMATNVPTKDSTGVATLAARKSILKLAQRMTWSFCHAVGASSFHTWTKFPSKTGEDIRISSRKNLNDPGEPLGLILAAVSSVWLPVSPNVLFGFLRDEARRSEWEMMSSGGSVQSIANLAKGKDRGNAVNIQKIQSKDNSVWVLQDSCTSAYESMVAYAPVEFAGLQSVLTGCDSSNLAILPSGFSILPDGIEGRPLVIRSRQEEKETEGGSLVTMVFQMLVNASPTTKLTMESVESANNLVSCTLRNIRTSLRCEDG* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00562 749 FunFam Homeobox-leucine zipper protein HDG1 80 170 - -
Lapu10g00562 749 CDD START_ArGLABRA2_like 259 487 - -
Lapu10g00562 749 ProSiteProfiles 'Homeobox' domain profile. 94 154 IPR001356 GO:0003677
Lapu10g00562 749 SUPERFAMILY Bet v1-like 518 737 - -
Lapu10g00562 749 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 94 744 IPR042160 -
Lapu10g00562 749 Pfam Homeodomain 97 152 IPR001356 GO:0003677
Lapu10g00562 749 Gene3D - 83 166 - -
Lapu10g00562 749 FunFam Homeobox-leucine zipper protein GLABRA 2 264 487 - -
Lapu10g00562 749 SUPERFAMILY Bet v1-like 257 488 - -
Lapu10g00562 749 MobiDBLite consensus disorder prediction 47 105 - -
Lapu10g00562 749 SUPERFAMILY Homeodomain-like 85 155 IPR009057 -
Lapu10g00562 749 Coils Coil 204 224 - -
Lapu10g00562 749 CDD homeodomain 101 152 IPR001356 GO:0003677
Lapu10g00562 749 SMART START_1 264 488 IPR002913 GO:0008289
Lapu10g00562 749 ProSitePatterns 'Homeobox' domain signature. 129 152 IPR017970 GO:0000981|GO:0006355
Lapu10g00562 749 ProSiteProfiles START domain profile. 255 491 IPR002913 GO:0008289
Lapu10g00562 749 Coils Coil 153 180 - -
Lapu10g00562 749 Gene3D - 323 486 IPR023393 -
Lapu10g00562 749 SMART HOX_1 96 158 IPR001356 GO:0003677
Lapu10g00562 749 Pfam START domain 265 488 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00562 Lapu-Chr10 7891261 7896718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00562 57 748 Homeobox Transcription Factor Family AT1G79840 64.571 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu10g00562 START 9.7e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00562 K09338 - gmx:100806193 1277.31