Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00558 ATGAGTCGCTCATTGAAAGCTTTCAACAAACACCTTACTCTCCTCCCTCTCCCTCTACACCAACGCTCTTCTTTTGCCCATCCCTTCATAACTTCCTCTTCTTTACCTCTTTTCCCACATCACGTTTCCTACCCCAGGTTCTCTTTCTCTCACCTTCGTCCACTCTCTTCATCTGCACCTGCTACATTAATGGAGGTGGTGAAAGCAATTGCTAAGCAAGAACCTACAGTTCATGAAAATGTTGCTATCACAGCTGATCAGAAGAGTTATAGCTACAAGGAACTCATCTCGTCAGCACAGCAGATATCTAATCTCTTGTGTGCGAGTGATGCACAAACAGGAAATCTTGGTGGAGCTCGAATAGGAATTGTAGCCAAACCCTCTGCTGAATTTGTTGCTGGAATAATTGGGATTTGGCTCAGTGGAGGTGTTGCTGTTCCCCTTGCAATCAGCTATCCAGAAGTAGAGCTCTTGTATGTGATTAATAATTCGGATATATCTGCAATACTCAGTACTGAAGAGCATAGTGAATTAATGCAAAGCGTAGCCAATAAAAGCTCTTCTCAGTTTTTTCATCTTCCACCTGTTGTCAACAAGTCTTCAGAGAAAAGCAGAGACGAACACTCACAGAATGGGAAAATTCATGCAGACAGAATTTCCTTGGATGATATTCGAAGATCAAGTGAAGAAGATCCAGCAGTGATTTTGTACACCAGTGGGACTACAGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTGCGCAGGTCCAAACTTTGGCAAAAGCATGGGAGTACACATCTGCTGACAAGTTTCTGCATTGTCTGCCACTACATCATGTTCATGGGCTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGTTCCACGGTTGAGTTTTTGCCAAAATTTAGTGTGAGGGGAGTTTGGCAGAGATGGCGGGAGTCATATCCAACTGATGGTTCTAAGACTGATGATGCTATAACTGTATTCACTGGAGTTCCAACTATCTATGCCCGATTGATACAAGGTTATAATGCAATGGATCCTGAGCTACAACAGGTTTCAGCATCTGCTGCAAATAACTTGCGTCTTATGATGTGTGGGTCCTCTGCGCTTCCACTACCTGTTATGCAAGAATGGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAATTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCAGGAACTGTGGGCAAACCGTTTCCTGGTATACAGGTCAAGATTATTGCTGATGAAGAGAGTGAGGATGACAATAGTGGAATGGGTGAGCTTTGTGTTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAGGTAACAAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCAGTTACTACAGATGAAGATGGATATTTCATCATTTTAGGACGTACTAATGCCGATATAATCAAGGCTGGTGGTTATAAGCTGTCTGCATTAGAAATTGAATCAGTTATCATAGAGCATCCAGCTGTCTCAGAATGTTGCATTTTAGGATTACCAGACAAAGACTATGGAGAGATTGTAGGTGCAATCATTGTGCCACATGCTGATGTTAAAGTGAAGCGAGATCAAGAATCAAAGCCTGTTCTAACCCTAGAAGAACTATCCACCTGGGCCAAAGACAAAATTGCACCTTACAAGATTCCAACCAAACTAATCCTGTGGGACAAACTCCCTCGCAATGCCATGGGAAAGGTAAATAAAAAGGAGCTGAAGAAACTGGTGGTTTAA 1815 0.4248 MSRSLKAFNKHLTLLPLPLHQRSSFAHPFITSSSLPLFPHHVSYPRFSFSHLRPLSSSAPATLMEVVKAIAKQEPTVHENVAITADQKSYSYKELISSAQQISNLLCASDAQTGNLGGARIGIVAKPSAEFVAGIIGIWLSGGVAVPLAISYPEVELLYVINNSDISAILSTEEHSELMQSVANKSSSQFFHLPPVVNKSSEKSRDEHSQNGKIHADRISLDDIRRSSEEDPAVILYTSGTTGKPKGVVHTHRSIIAQVQTLAKAWEYTSADKFLHCLPLHHVHGLFNGLMAPLYAGSTVEFLPKFSVRGVWQRWRESYPTDGSKTDDAITVFTGVPTIYARLIQGYNAMDPELQQVSASAANNLRLMMCGSSALPLPVMQEWEAITGHRLLERYGMTEFVMALSNPLKGERKPGTVGKPFPGIQVKIIADEESEDDNSGMGELCVKSPSLFKEYWKLPEVTKESFTDDGFFKTGDAVTTDEDGYFIILGRTNADIIKAGGYKLSALEIESVIIEHPAVSECCILGLPDKDYGEIVGAIIVPHADVKVKRDQESKPVLTLEELSTWAKDKIAPYKIPTKLILWDKLPRNAMGKVNKKELKKLVV* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00558 604 PANTHER ACYL-COA SYNTHETASE 61 600 - -
Lapu10g00558 604 SUPERFAMILY Acetyl-CoA synthetase-like 52 603 - -
Lapu10g00558 604 Gene3D - 66 491 IPR042099 -
Lapu10g00558 604 FunFam Acyl-CoA synthetase family member 3 73 491 - -
Lapu10g00558 604 Gene3D - 494 604 IPR045851 -
Lapu10g00558 604 ProSitePatterns Putative AMP-binding domain signature. 235 246 IPR020845 -
Lapu10g00558 604 Pfam AMP-binding enzyme 78 497 IPR000873 -
Lapu10g00558 604 Pfam AMP-binding enzyme C-terminal domain 508 593 IPR025110 -
Lapu10g00558 604 CDD MCS 81 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00558 Lapu-Chr10 7852542 7860193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00558 229 603 Monolignol Biosynthesis Gene Families AT4G19010 28.753 3.38e-43 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00558 K18660 - gmx:100813324 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00558 10 7852542 7860193 Lapu10g00558 10 7852542 7860193 ECH