Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00548 ATGTCTACACCCTTAGAACATGATTACATAGGCTTAAGAGAGCCTCCATACATGGAGAAAAGCTATGATAAGATATCGTCTTCAGTTTCATCCAACCTCTCCTCTGATGATGAGAACAGTTCATCTCTGAACTTCAAGGAGACAGAGCTGAGGCTTGGCCTGCCCGGTTGTGAGTCTCCAGAGAACAAATCAGGAGCTGCAGGGATCTCTCTTTTTGGTAAGGATTTGCAGAATAATGGCTATTCTGCTTCCTCATCCCCTTCCAAGAATCTCAAGAGGGGTTTCTCTGATGCCATTAGCTCCTCCTCCTCTTCTTCTGGGAAATGGATTTTCTCAGCCAGTGATGCAACTGAGGATGATTTCAGAAACGGTGCTAATACCTCTGCACTATGCAACAAAGAGGTTGGTTTGGTTCCTCACTCTGAGAAGCCAGCCCAGGTTGCTGCAACAATTGAACATGCTACTGCTCCTGCTGCAAAAGCACAAGTTGTGGGATGGCCACCAATTCGTTCTTTTCGAAAGAACGCAATGGCCTATAATTTGGCAAAAAGCAACATTGAAGCTGAGGAGAAATCAGGAGTTGGTTGTCTTTATGTTAAGGTCAGCATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTGAGAACCCACAGCAACTATATTGAACTTTCTTCTGCTCTTGAAAAAATGTTCAGCTGCTTTACCATTGGTCAATGCAGTTCACGTGGAGTTGCTGGGAAAGAGGGATTGAGTGAGAGAGCTTTCAGGGATCTTGTTGATGGCTCTGAATATGTTCTTACATACGAAGATAAAGATGGAGACTGGATGCTTGTGGGTGATGTTCCTTGGGACATGTTCACTGAGTCATGTAAGAAACTAAGGATAATGAAGGGCTCTGAGGCAATTGGACTAGCTCCAAGGGCAATGGAAAAATCTAGGAGCCAGTACTAG 951 0.4469 MSTPLEHDYIGLREPPYMEKSYDKISSSVSSNLSSDDENSSSLNFKETELRLGLPGCESPENKSGAAGISLFGKDLQNNGYSASSSPSKNLKRGFSDAISSSSSSSGKWIFSASDATEDDFRNGANTSALCNKEVGLVPHSEKPAQVAATIEHATAPAAKAQVVGWPPIRSFRKNAMAYNLAKSNIEAEEKSGVGCLYVKVSMDGAPYLRKVDLRTHSNYIELSSALEKMFSCFTIGQCSSRGVAGKEGLSERAFRDLVDGSEYVLTYEDKDGDWMLVGDVPWDMFTESCKKLRIMKGSEAIGLAPRAMEKSRSQY* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00548 316 ProSiteProfiles PB1 domain profile. 196 298 IPR000270 GO:0005515
Lapu10g00548 316 MobiDBLite consensus disorder prediction 23 44 - -
Lapu10g00548 316 Pfam AUX/IAA family 47 307 IPR033389 -
Lapu10g00548 316 Gene3D - 191 310 - -
Lapu10g00548 316 MobiDBLite consensus disorder prediction 21 44 - -
Lapu10g00548 316 FunFam Auxin-responsive protein 191 308 - -
Lapu10g00548 316 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 303 IPR003311 GO:0005634|GO:0006355
Lapu10g00548 316 SUPERFAMILY CAD & PB1 domains 196 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00548 Lapu-Chr10 7780077 7783642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00548 199 301 B3 DNA Binding Superfamily AT2G46530 33.981 6.07e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu10g00548 AUX_IAA 3.2e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00548 K14484 - gmx:100804782 482.256