Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00547 ATGGGTGGCATTGCATTCGGACGCTTTGATGATTCTTTCAGTTTAAGCTCTATCAAGGCCTATATTGCTGAGTTCAATTCAACCTTGATCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGGTAAGTTGACATCAGATGCAGCACTTGATCCTGCTGGGTTACTGGCAGTTGCTATTTGCCACGGTTTTGCACTTTTTGTTGCAGTTTCTGTTGGTGCCAACATCTCTGGTGGCCATGTCAACCCTGCAGTGACTTTTGGATTGGCTCTTGGTGGCCACATCACCATCCTCACTGGCATCTTCTACTGGATTGCACAGCTTCTTGGCTCCATAGTGGCATGTTTTCTTCTCAGCTATGTCACAGGAGGTTTGGCAATTCCAGTCCACAGTGTGGCTTCTGGAGTTGGAGCGGTAGAAGGAGTTGTTACAGAGATCATCATCACATTTGGTTTGGTGTACACCGTATATGCCACAGCAGCTGACCCTAAGAAGGGTTCATTGGGCACCATTGCACCCATTGCCATTGGTTTCATTGTTGGTGCCAACATCTTGGCAGCAGGGCCATTCTCTGGTGGCTCAATGAACCCTGCACGCTCCTTTGGGCCTGCAGTTGTGAGTGGTGACTTCCATGACAACTGGATCTACTGGGTTGGACCTCTTATTGGAGGTGGTTTGGCTGGCCTCATCTACGGCAATGTGTTCATTCGCTCTGACCATGCACCTCTTTCCAGTGAATTTTGA 747 0.4833 MGGIAFGRFDDSFSLSSIKAYIAEFNSTLIFVFAGVGSAIAYGKLTSDAALDPAGLLAVAICHGFALFVAVSVGANISGGHVNPAVTFGLALGGHITILTGIFYWIAQLLGSIVACFLLSYVTGGLAIPVHSVASGVGAVEGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLIGGGLAGLIYGNVFIRSDHAPLSSEF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00547 248 PANTHER AQUAPORIN-8 4 241 IPR034294 -
Lapu10g00547 248 SUPERFAMILY Aquaporin-like 13 241 IPR023271 -
Lapu10g00547 248 Gene3D Glycerol uptake facilitator protein. 2 246 IPR023271 -
Lapu10g00547 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Lapu10g00547 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu10g00547 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu10g00547 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu10g00547 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu10g00547 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu10g00547 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu10g00547 248 FunFam Probable aquaporin TIP1-1 2 248 - -
Lapu10g00547 248 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu10g00547 248 CDD MIP 19 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu10g00547 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00547 Lapu-Chr10 7776820 7778865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00547 1 246 Major Intrinsic Protein MIP AT3G16240 80.972 7.87e-144 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00547 K09873 - gmx:100306092 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00547 10 7776820 7778865 Lapu10g00547 10 7776820 7778865 ECH