Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00542 ATGACACAACCAACAACCTCGTCTGAAACAACCTCTTCTACATCCTCACCCTCCTCGCATTCCGCCCCAAAGCCTCAAGCCCGGGCCAAGAGGCCCAGAGACTGCAGCAAGCACCCCGTCTACCACGGCGTACGGAAGCGCAACTGGGGCAAATGGGTCTCCGAAATCCGCGAACCGCGCAAGAAGTCTCGCATCTGGCTCGGAACCTTCGCCACCCCCGAAATGGCGGCGCGGGCCCATGACGTGGCGGCGCTCACCATCAAGGGCCAGTCCGCAATACTCAACTTCCCTGAAATCGCAGACCTGCTCCCCCGTCCCCTCACCTGCTCCCCACGTGACATTCAAGCAGCCGCCGCCGCCGCCGCCTCCATGTCTAAATTTGACCGGGTAACACAATCCTCGGACTCGGAAACAGAAACTTCGGAAGAATCCGAACTGAGCGAGATAGTTGAGCTTCCGAACATCGAAGACAGCTTTGACCCATCCGTTGACTCGTTCGTGATGGTGGACGTTGTGGACAGTTGGATGTTTCCGCCATTGGACTCGTTCTGTGCGGCGTTTTGTGATGAGCTATTTCCGCAACAGTGTTGTTCTGAAACGCTATTACCCATTTGGGATTGA 621 0.5684 MTQPTTSSETTSSTSSPSSHSAPKPQARAKRPRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTIKGQSAILNFPEIADLLPRPLTCSPRDIQAAAAAAASMSKFDRVTQSSDSETETSEESELSEIVELPNIEDSFDPSVDSFVMVDVVDSWMFPPLDSFCAAFCDELFPQQCCSETLLPIWD* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00542 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 158 - -
Lapu10g00542 206 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Lapu10g00542 206 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Lapu10g00542 206 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Lapu10g00542 206 FunFam Ethylene-responsive transcription factor 2 39 98 - -
Lapu10g00542 206 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Lapu10g00542 206 MobiDBLite consensus disorder prediction 1 41 - -
Lapu10g00542 206 MobiDBLite consensus disorder prediction 128 147 - -
Lapu10g00542 206 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Lapu10g00542 206 MobiDBLite consensus disorder prediction 27 41 - -
Lapu10g00542 206 MobiDBLite consensus disorder prediction 1 23 - -
Lapu10g00542 206 Pfam AP2 domain 39 89 IPR001471 GO:0003700|GO:0006355
Lapu10g00542 206 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Lapu10g00542 206 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00542 Lapu-Chr10 7739816 7741417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00542 4 179 AP2-EREBP Transcription Factor Family AT5G11590 52.261 1.69e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu10g00542 AP2 4.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00542 K09286 - gmx:100804056 270.011