Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00539 ATGGAAGCGCCGGAATACTTCGTCGGAGGCTATTTCGCAGCCGGAGGAGCTGACCAATTCTCTCAGCCGGAGAAGCGCCATGCGGACCAGAAAATCGGTGAGCCTTTCGCCATTGATGACCTCCTAGACTTCTCCCACGCCGACGCCATTATGTCCGATGGTTTCTTCGACAATGTAGCAGGAAACTCCACCGACTCCTCCACCGTCACCGCTGTTGACAGCTGCAACTCCTCAATTTCTGGCGGCGAAAACCGCTTCGCCGCAGCCATTGTCCCTCGCGGCTTCGCCGGCGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGTACGATGACATGGCGGAACTGGAATGGCTCTCGAACTTCGTTGAAGACTCGTTCTCCGCCGAGGAGGAGTTGAAGACGCTGCAGCTACTCTCCGGCACGGCTGCGTCCCCCGCCATTGGCGCGAAACCACAGACGCCGGAGTCCTCATCCTCCACCGACACGCTTCCGCCGTTCGCTTCCGACGAAACCGCTCGAAACGCACCGTTTCTCCACTCGGAGACGCCTCTCCCGGGGAAGGCGCGCAGCAAGCGCTCACGCGCGGCGCCGGGGGACTGGTCCACCCGCCTGCTTCACCTAGTGGCGCCGGAGCAAGAGAAGCCGCCGCAGCCGAAGGCCTCGCCTGTTAAGAAGAGAGAGGGAACGAATGCGGAGTGTTCCGGACGGAAATGCCTGCACTGCGGCGCGGAGAAGACGCCGCAGTGGCGGACGGGACCGATGGGACCGAAGACGCTGTGCAACGCGTGCGGCGTGCGGTTCAAGTCCGGGCGGCTGGTTCCAGAGTACCGACCAGCGGCGAGCCCGACATTCGTGTCGACGAAGCATTCGAATTCGCATCGGAAGGTTTTGGAGCTGAGGCGGCAGAAGGAGCTGCAGCGACAGCAGCATCAGCACTTGATAAGTCAGAGTTCAATTTTCGGCGTATCAAACGGCGGAGATGAGTTCTTGATCCATCATCATCACCATTGTGGGCCAGATTTTAGACACGTTATTTAG 1038 0.6002 MEAPEYFVGGYFAAGGADQFSQPEKRHADQKIGEPFAIDDLLDFSHADAIMSDGFFDNVAGNSTDSSTVTAVDSCNSSISGGENRFAAAIVPRGFAGDPQFSGELCVPYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGTAASPAIGAKPQTPESSSSTDTLPPFASDETARNAPFLHSETPLPGKARSKRSRAAPGDWSTRLLHLVAPEQEKPPQPKASPVKKREGTNAECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKELQRQQHQHLISQSSIFGVSNGGDEFLIHHHHHCGPDFRHVI* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00539 345 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 295 - -
Lapu10g00539 345 Pfam GATA zinc finger 238 271 IPR000679 GO:0006355|GO:0043565
Lapu10g00539 345 CDD ZnF_GATA 237 284 IPR000679 GO:0006355|GO:0043565
Lapu10g00539 345 ProSiteProfiles GATA-type zinc finger domain profile. 232 268 IPR000679 GO:0006355|GO:0043565
Lapu10g00539 345 SMART GATA_3 232 282 IPR000679 GO:0006355|GO:0043565
Lapu10g00539 345 Gene3D - 232 282 IPR013088 GO:0006355|GO:0008270
Lapu10g00539 345 PIRSF Txn_fac_GATA_plant 20 323 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lapu10g00539 345 MobiDBLite consensus disorder prediction 145 229 - -
Lapu10g00539 345 ProSitePatterns GATA-type zinc finger domain. 238 263 IPR000679 GO:0006355|GO:0043565
Lapu10g00539 345 MobiDBLite consensus disorder prediction 150 167 - -
Lapu10g00539 345 FunFam GATA transcription factor 212 313 - -
Lapu10g00539 345 PANTHER GATA TRANSCRIPTION FACTOR 33 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00539 Lapu-Chr10 7711897 7713612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00539 34 345 C2C2-Gata Transcription Factor Family AT4G32890 47.095 5.10e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu10g00539 GATA 4.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00539 - - gmx:100776605 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00539 10 7711897 7713612 Lapu10g00539 10 7711897 7713612 ECH