Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00538 ATGTCCTGCAAGGATGGTAGCAAAAACGGAATGGATAACGGGAAGTATGTCCGTTACACACCTGAGCAGGTTGAAGCCTTAGAGAGGCTCTATCACGATTGTCCCAAACCAAGTTCCATTCGCCGCCAGCAACTCATACGCGAGTGCCCCATTCTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAACAGAGAAAGGAGTCGTCGCGGCTGCAAGCTGTAAATAGGAAGTTGACGGCGATGAACAAGCTGCTGATGGAGGAGAATGATAGGTTGCAAAAACAGGTGTCTCAACTTGTGTATGAAAATGGTTATTTTCGTCAACACACCCAAAATACTACGCAGGCAACCAAAGACACTAGCTGTGAATCAGCTGTGACGAGTGGTCAGCAGCACAGTTTGACAACTCAACATCCCCCACGGGATGCGAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATATCTCATGGTTGCTCAGGTGTGGCAGCAAGAGCCTGTGGTCTAGTGGGACTAGAACCCACTAGGGTTGCAGAAATCCTCAAAGATCGTCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCCACCACATTGGCACCTGCTCGAGAGTTCTGGTTGTTGCGCTATACTTCTGTTTTAGAAGATGGAAGTCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCTAGCATGCCTCCCATGCAACATTTTGTTAGGGCAGAGATGCTGCCTAGTGGGTACCTAATCAGACCTTGTGAAGGAGGTGGTTCCATCATCCATATTGTTGATCATATGGATTTAGAGCCATGGAGTGTACCAGAAGTGCTACGTCCACTGTACGAATCATCAACAGTGCTGGCTCAGAAGACAACAATGGCGGCCTTACGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCCAACGTCACTGGGTGGGGTAGACGACCAGCAGCTCTACGAGCTCTTAGCCAAAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACCGATGAGGGATGGACACCAATTGGCAATGATGGTGTGGATGATGTTACTATTCTAGTGAATTCATCCCCTGACAAATTAATGGGTCTGAATCTTCCCTTTACCAACGGATTTCCGTCTGTCAGTAATGCAGTGCTATGTGCCAAAGCATCCATGCTATTACAGAATGTGCCCCCTGCCATTCTCCTAAGATTCCTGCGGGAGCATAGATCAGAATGGGCAGACAACAATATGGATGCTTACACAGCTGCTGCTATTAAAGTTGGCCCTTGCAGCTTATCAGGATCTCGTGTTGGAAATTATGGAGGTCAAGTAATACTCCCTCTAGCACACACAATTGAGCATGAAGAGTTTTTGGAAGTCATTAAATTGGAAGGAGTTGCTCATTCTCCCGAAGATACAATTATGCCCAGAGAAATGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTCGGCACCTGTGCCGAACTTATATCGGCTCCAATTGATGCTTCTTTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGCCCCAATCGCACCCTTGACCTTGCATCTGCCCTTGAGATTGGCCCCAGTGGAAACCGAGCTTCGAATGAATGTGCTGGAAATTCCAGCTGTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGCCATATGCAAGAGCATGTAGCATCTATGGCACGCCAATATGTTCGGAGCATTATATCTTCAGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTGAGATCACCCTTGGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTACAGGTGCTACTTGGGTGTGGAGTTACTTAAGTCTAACAACGAGGGGAATGAATCTTTGCTCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGGCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTGGAGACCACCCTAGTTGCATTACAAGATATATCTTTAGAGAAAATATTTGATGATCATGGACGAAAAGTTCTCTTTTCAGAGTTTCCCCAGATTATTCAACAGGGTTTTGCATGTCTCCAAGGTGGTATTTGTCTTTCAAGCATGGGGCGACCCGTTTCATACGAGAGGGTTGTTGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCCTTTGTTTGA 2514 0.461 MSCKDGSKNGMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTQATKDTSCESAVTSGQQHSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCSGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPAREFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPMQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRHLRQISHEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTPIGNDGVDDVTILVNSSPDKLMGLNLPFTNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGVAHSPEDTIMPREMFLLQLCSGMDENAVGTCAELISAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALEIGPSGNRASNECAGNSSCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFSNQAGLDMLETTLVALQDISLEKIFDDHGRKVLFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFMNWSFV* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00538 837 Pfam Homeodomain 15 73 IPR001356 GO:0003677
Lapu10g00538 837 SUPERFAMILY Bet v1-like 159 369 - -
Lapu10g00538 837 CDD homeodomain 15 75 IPR001356 GO:0003677
Lapu10g00538 837 SUPERFAMILY Bet v1-like 396 595 - -
Lapu10g00538 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 11 837 IPR044830 GO:0003700
Lapu10g00538 837 ProSiteProfiles 'Homeobox' domain profile. 10 74 IPR001356 GO:0003677
Lapu10g00538 837 MobiDBLite consensus disorder prediction 120 152 - -
Lapu10g00538 837 ProSiteProfiles START domain profile. 150 364 IPR002913 GO:0008289
Lapu10g00538 837 CDD bZIP 67 106 - -
Lapu10g00538 837 SMART START_1 159 369 IPR002913 GO:0008289
Lapu10g00538 837 FunFam homeobox-leucine zipper protein ATHB-15 195 376 - -
Lapu10g00538 837 Pfam START domain 160 368 IPR002913 GO:0008289
Lapu10g00538 837 SMART HOX_1 12 78 IPR001356 GO:0003677
Lapu10g00538 837 Gene3D - 6 81 - -
Lapu10g00538 837 SUPERFAMILY Homeodomain-like 14 76 IPR009057 -
Lapu10g00538 837 CDD START_ArGLABRA2_like 154 369 - -
Lapu10g00538 837 Gene3D - 194 375 IPR023393 -
Lapu10g00538 837 Pfam MEKHLA domain 694 836 IPR013978 -
Lapu10g00538 837 Coils Coil 80 111 - -
Lapu10g00538 837 MobiDBLite consensus disorder prediction 120 149 - -
Lapu10g00538 837 FunFam Homeobox-leucine zipper protein REVOLUTA 15 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00538 Lapu-Chr10 7693672 7701879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00538 1 789 Homeobox Transcription Factor Family AT1G52150 85.209 0.0 1398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu10g00538 START 2.7e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00538 K09338 - gmx:100819365 1637.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00538 10 7693672 7701879 Lapu10g00538 10 7693672 7701879 ECH
Lapu5g00186 5 1486102 1493932 Lapu10g00538 10 7693672 7701879 PCT