Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00531 ATGTTCTCCTCCAATGCATGCTCCTTCATGTGCAACTCGGGCATAGGTGGGTGGTCTTCGTGCAGTAACTTCTCTGCTTCACAGAGGAGGCATTCTGCTCCATCGAGAGTGACTTGTTGTGCTCCAACTTCAAGCAACGGAAAAACTCACGCCAGCTTTGTGATGGAGAAAGAGGAAAATGGGGCTTCCACGGAGGTCGATGTCAACCCAATCCCCGGCGGCGGCGTCCGGGATGTGTACGGCGAAGATAGGGCCACGGAGGATCAGGGTGTAACCCCATGGAGTGTCTCCGTTTCTTGCGGGTATGCTTTGTTGAGAGATCCACACTTCAACAAAGGACTCGCCTTCACTGAAAAAGAGAGGGACGCCCACTACTTGCGTGGCCTTCTTCCCCCAACAGTTATTTCTCAAGAAACACAGGTAAAGAAAATGATCCAACTCATACGCCAGTATCAAGTTCCATTGCACAAGTACATTGCAATGATGGATCTTCAGGAGAGAAATGAAAGGTTGTTCTACAAGCTTCTACTTGATCATGTTGAGGAGTTACTACCAGTTGTCTATACTCCAACAGTTGGTGAAGCTTGCCAAAAATATGGGAGTATCTTCATGCGTCCTCAGGGACTTTATATAAGTTTGAAGGAGAAAGGGAAGATTCTTGAAGTACTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTAACTGATGGAGAGAGAATTCTGGGTCTTGGGGATCTTGGCTGTCAGGGAATGGGAATACCAGTAGGAAAACTTTCTTTATATTCAGCACTTGGTGGAGTTCGTCCTTCTGCTTGCTTGCCTATTACCATCGATGTGGGTACAAACAATGAGACATTGTTGAATGAAGAATTATATATAGGGCTCAAGCATAAACGAGCAACTGGGCAGGAATATTCTGAACTTCTGCATGAATTTATGAATGCTGTCAAGCAGAATTATGGTGAAAAGATCCTTGTTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAAATATAGGTCAACGCATCTTGTCTTTAATGATGATATTCAGGGAACAGCTTCAGTGGTTCTTGCAGGACTAGTTGCAGCACTGAAATTGGTTGGGGGAAACTTGGCTGATCACAGGTTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCTCTTGAAACTTCAAAACGGACAAATTTACCTCTAGAACAAGTGCGCAAGAACATTTGGTTGGTGGACTCAAAGGGTTTGATTGTGAGTTCCCGCAAAGAATCACTTCAACATTTTAAGAAGCCCTGGGCTCATGAACATGAACCTGTTAAGGAACTTGTAGATGCTGTTAATCAAATTAAGCCAACGGTGTTAATTGGAACATCAGGACGAGGGAGAACTTTTACTAAGGAAGTGATTGAAGCTATGGCTTCCATTAATGAGAAACCTATTATTCTTTCCCTTTCCAACCCGACATCACAGTCAGAATGCACTGCTGAAGAAGCTTACACTTGGAGCCAGGGACGTGCCATTTTTGCTAGTGGGAGCCCTTTTGACCCAGTTGAATATGCTGGAAAAGTGTTTGTGCCTGGCCAGGCCAATAATGCATACATTTTTCCTGGATTTGGTCTTGGTTTAATAATGTCTGGAACCATTCGTGTTCATGATGACCTACTTCTGGCAGCTTCCGAAGCTTTGGCTTCACAGGTGACTCAGGAGGACTATGACAAGGGGCTCATATACCCTCCTTTCAGCAACATCAGAAAGATTTCAGCACACATAGCAGCGGAGGTGGCTGCTAAGGCCTATGAGCTTGGCTTGGCCACTCGCCTTCCTCAACCAAAAGATTTGGTGAAGTTTGCTCTGAGCTCTATGTACACACCAGCCTATAGAAACTACCGGTGA 1923 0.4488 MFSSNACSFMCNSGIGGWSSCSNFSASQRRHSAPSRVTCCAPTSSNGKTHASFVMEKEENGASTEVDVNPIPGGGVRDVYGEDRATEDQGVTPWSVSVSCGYALLRDPHFNKGLAFTEKERDAHYLRGLLPPTVISQETQVKKMIQLIRQYQVPLHKYIAMMDLQERNERLFYKLLLDHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGKILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGVRPSACLPITIDVGTNNETLLNEELYIGLKHKRATGQEYSELLHEFMNAVKQNYGEKILVQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKRTNLPLEQVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVKELVDAVNQIKPTVLIGTSGRGRTFTKEVIEAMASINEKPIILSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPVEYAGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVTQEDYDKGLIYPPFSNIRKISAHIAAEVAAKAYELGLATRLPQPKDLVKFALSSMYTPAYRNYR* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00531 640 PIRSF ME 52 640 IPR001891 GO:0004470|GO:0004471
Lapu10g00531 640 Pfam Malic enzyme, NAD binding domain 356 608 IPR012302 GO:0051287
Lapu10g00531 640 Gene3D - 99 353 IPR037062 GO:0004471
Lapu10g00531 640 Pfam Malic enzyme, N-terminal domain 165 346 IPR012301 GO:0004471
Lapu10g00531 640 PANTHER MALIC ENZYME-RELATED 74 639 - -
Lapu10g00531 640 SMART Malic_M_2 356 609 IPR012302 GO:0051287
Lapu10g00531 640 FunFam Malic enzyme 354 640 - -
Lapu10g00531 640 PRINTS Malic enzyme signature 352 368 IPR001891 GO:0004470|GO:0004471
Lapu10g00531 640 PRINTS Malic enzyme signature 383 399 IPR001891 GO:0004470|GO:0004471
Lapu10g00531 640 PRINTS Malic enzyme signature 327 345 IPR001891 GO:0004470|GO:0004471
Lapu10g00531 640 PRINTS Malic enzyme signature 231 260 IPR001891 GO:0004470|GO:0004471
Lapu10g00531 640 PRINTS Malic enzyme signature 171 195 IPR001891 GO:0004470|GO:0004471
Lapu10g00531 640 PRINTS Malic enzyme signature 267 289 IPR001891 GO:0004470|GO:0004471
Lapu10g00531 640 PRINTS Malic enzyme signature 486 502 IPR001891 GO:0004470|GO:0004471
Lapu10g00531 640 ProSitePatterns Malic enzymes signature. 352 368 IPR015884 GO:0004471
Lapu10g00531 640 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 83 355 IPR046346 -
Lapu10g00531 640 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 356 639 IPR036291 -
Lapu10g00531 640 SMART malic_2 165 346 IPR012301 GO:0004471
Lapu10g00531 640 Gene3D - 354 640 - -
Lapu10g00531 640 CDD NAD_bind_1_malic_enz 356 634 - -
Lapu10g00531 640 FunFam Malic enzyme 99 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00531 Lapu-Chr10 7619508 7635540 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00531 K00029 - gmx:100785718 1118.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00531 10 7619508 7635540 Lapu10g00531 10 7619508 7635540 ECH
Lapu10g00531 10 7619508 7635540 Lapu5g00191 5 1534158 1541337 ECH
Lapu9g01718 9 32013918 32018957 Lapu10g00531 10 7619508 7635540 ECH
Lapu10g00531 10 7619508 7635540 Lapu9g01718 9 32013918 32018957 ECH
Lapu10g00531 10 7619508 7635540 Lapu7g02005 7 36287633 36288800 ECH
Lapu10g00531 10 7619508 7635540 Lapu10g00164 10 3463845 3465398 ECH
Lapu10g00531 10 7619508 7635540 Lapu1g01508 1 27850222 27852313 ECH
Lapu5g00191 5 1534158 1541337 Lapu10g00531 10 7619508 7635540 PCT