Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00527 ATGTGGCAAAGAAGGCACGGGTCTTCAGAGGAGAGGAAACTGGAGCTTAGGCTTGGTCCACCCAGTGAAGAGTCTCTCAATGAAAGCATAAAAAAATGTATCACAGAAAGAAATGAATCACCACTTACTCTTGGTTACTCCTCAACTCACGAAATTTCCACTTTTGACCAGCCAGGTCCAGGTGGGGCTATGTTGCCCACTGCATGGCGTTCCACATCCTATCACCAACACCAGGCTAAAGCCAAAGCTTCATCATTTTTTCAACTCCAATCTAGGCCACAAAACATGTTAATGATGAGAAAGGAAGTGCCACAACTTTGTTGTGTAGAGAACAAGGCTTTCTCACTCTCTTCTGCAGATGCAGCCGTGTCCAAAAGAACATCTTCAGGTTCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCTCTTCTAAACTGCCTACTGGGTCCCAGCTGCATCAGCATGTTGTTCCAGACAACATTGCTAGCAAAAAACCTACTCAGAACTGTGGCAAAGGCCTGTTTGTGAAGATCAATATGGATGGTGTTCCTATAGGAAGAAAACTGGACATCAATGCTTATAACAGCTATGAAAAACTTTCCTCTGCTGTTGATGAGCTCTTTAGAGGCCTCCTTGCAGAGATGAAGTTGTCTCATATTGCCTCTTCCCACCGTTATTCTGGTCAAAGAGATTCCTGTGCTGGTGGAATTCAAAACAGAGAAGAGGAAGAGAAAGAGAAAGCCAATACGGGTTTATTGGTTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGAGATGTACCTTGGCACATGTTTGTGTCGACAGTTAAGAGGCTGAGAGTATTGAAGAGTTCCGATCTCCCTGCTTTTACACTTTGTAGTAAGCAAGACTAG 942 0.4406 MWQRRHGSSEERKLELRLGPPSEESLNESIKKCITERNESPLTLGYSSTHEISTFDQPGPGGAMLPTAWRSTSYHQHQAKAKASSFFQLQSRPQNMLMMRKEVPQLCCVENKAFSLSSADAAVSKRTSSGSVVGWPPIRSFRKNIASGSSSKLPTGSQLHQHVVPDNIASKKPTQNCGKGLFVKINMDGVPIGRKLDINAYNSYEKLSSAVDELFRGLLAEMKLSHIASSHRYSGQRDSCAGGIQNREEEEKEKANTGLLVGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSDLPAFTLCSKQD* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00527 313 FunFam Auxin-responsive protein 175 312 - -
Lapu10g00527 313 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 302 IPR003311 GO:0005634|GO:0006355
Lapu10g00527 313 SUPERFAMILY CAD & PB1 domains 172 297 - -
Lapu10g00527 313 Pfam AUX/IAA family 14 303 IPR033389 -
Lapu10g00527 313 MobiDBLite consensus disorder prediction 1 28 - -
Lapu10g00527 313 Gene3D - 175 311 - -
Lapu10g00527 313 ProSiteProfiles PB1 domain profile. 180 300 IPR000270 GO:0005515
Lapu10g00527 313 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00527 Lapu-Chr10 7589046 7592663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00527 183 303 B3 DNA Binding Superfamily AT2G46530 25.620 6.03e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu10g00527 AUX_IAA 1.9e-64 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00527 K14484 - gmx:100793822 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00527 10 7589046 7592663 Lapu5g00198 5 1611832 1616082 ECH
Lapu10g00527 10 7589046 7592663 Lapu10g00527 10 7589046 7592663 ECH
Lapu5g00198 5 1611832 1616082 Lapu10g00527 10 7589046 7592663 PCT