Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00507 ATGGATGGTTTGAGTTGGGATACCTCCCAACTTGAAGCAAACACACCAATCCTGTGGAGTACTATTCAGCCACCACCAGACTTTGAAGGAGTCTACTCCATGCCCAATGTTCTCAGTCAAATACAAGAGATGCAGAAAGCTCAAACAGGTCATGCACACTCAAATTCTGAAAGAGTGATTTATCAGTCAGCAGATGCTACCACCACTTCTTCAGAGATAATGGATGTGATGCAAAAGCAAAACACAAATCTTTCACAGCATGCGCCAACCATGATGCCAGTGAAATCAGGAACTGGAGCCAGTTGGGGAGAAGCTTTCACATCTCAATCATACCCGTCTCTATCAGTCAATGCACCTCAAAGTATGAACCTGATTAGCAACTATATGCCAGATTTTAACATGGCCCACCACCACCAACATGAACAACAACTTGTCAATGGCTCACAAAATGGGAAGGGTGCTGGCTCTCTTGAGTCTTTTGACTGCTTGATTTCAGCTACCAATAGCAACACAGACACATCTGTTGAAGATGATGGGATCTCAATGATTTTATCTGACTGTAGAAACTTGTGGAACTTCAGCTATGGCAGTGCAGCTTCCACTGGTGAATCTGAGAGTAATGCTTCCAATGGTAGGAACAAAGACATCAAGTGTCCAGTCAATGAAATTGATGAAACAGTTTCTCAAAGCTCCTTGGATCGAGGAAAAACAGTACAATCGAAGGCTAATTGTTCAAAGAGGAGCCATGAGGAAGCTGAAATTATCAAAGTTGGTGCCACTGGCAGTGGTTCCTGCTTTAGTATTGTTCAGAATTCTTCTGCTATTGAAGAAGGTGGATTCAGACTTATCTCAGATGATCCATCAAAAAGCAAGAAACCCAGATGGAGCACGAGTTCCTCTTCAAATAATATCAATTTCCAGCAACCAAATTCATCCATGTCTTCATCCATTGAGGAACCTGACTCAGAGGCCATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCTGTGAACTTTGGCTTGGATGCGGCTGAAAAGCCAAAGAGGAAGAATGTGAGAATATCAACTGATCCACAAACTGTGGCTGCAAGGCATAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGCTTGTGCCTGGGGGAAGCAAGATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTATCTCAAGTTTCTCAGGTCACAGGTTAAGGCACTGGAATGTCTAGGAAACAAAGTTGATGAAATGAATTGTCCTCCTACAAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACATCTCTCAGTCACACCCATCATTCCCAGGGTTGA 1362 0.4332 MDGLSWDTSQLEANTPILWSTIQPPPDFEGVYSMPNVLSQIQEMQKAQTGHAHSNSERVIYQSADATTTSSEIMDVMQKQNTNLSQHAPTMMPVKSGTGASWGEAFTSQSYPSLSVNAPQSMNLISNYMPDFNMAHHHQHEQQLVNGSQNGKGAGSLESFDCLISATNSNTDTSVEDDGISMILSDCRNLWNFSYGSAASTGESESNASNGRNKDIKCPVNEIDETVSQSSLDRGKTVQSKANCSKRSHEEAEIIKVGATGSGSCFSIVQNSSAIEEGGFRLISDDPSKSKKPRWSTSSSSNNINFQQPNSSMSSSIEEPDSEAIAQMKEMIYRAAAFRPVNFGLDAAEKPKRKNVRISTDPQTVAARHRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALECLGNKVDEMNCPPTSIAFSFNPSFPMQTSLSHTHHSQG* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00507 453 MobiDBLite consensus disorder prediction 281 321 - -
Lapu10g00507 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 358 407 IPR011598 GO:0046983
Lapu10g00507 453 SMART finulus 364 413 IPR011598 GO:0046983
Lapu10g00507 453 MobiDBLite consensus disorder prediction 226 242 - -
Lapu10g00507 453 MobiDBLite consensus disorder prediction 226 245 - -
Lapu10g00507 453 MobiDBLite consensus disorder prediction 293 321 - -
Lapu10g00507 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 363 417 IPR036638 GO:0046983
Lapu10g00507 453 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 135 443 IPR045843 GO:0003700|GO:0006355
Lapu10g00507 453 Gene3D - 363 417 IPR036638 GO:0046983
Lapu10g00507 453 Pfam Helix-loop-helix DNA-binding domain 368 407 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00507 Lapu-Chr10 7424927 7427081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00507 97 450 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 46.774 2.88e-85 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu10g00507 HLH 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00507 - - vra:106773034 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00507 10 7424927 7427081 Lapu10g00507 10 7424927 7427081 ECH
Lapu5g00212 5 1753053 1754801 Lapu10g00507 10 7424927 7427081 PCT