Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00484 ATGAGTCGAGAGCAACAGAAGCGGGGGAAAGAGAAAGGTTCTGATGGTGCTGAAAAGGTCATTGTTGCCGTCAAGGCATCCAAAGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTGACTCATGTTGTTCAACCTGGGGATTGCATTACACTGCTAGTGGTTGTGCCTTCACAAAGTTCAGGCAGAAGACTATGGGGTTTTCCGAGATTTGCTGGTGACTGTGCCAGTGGTATTAAGAAGTACCCTCCAGGAACAATATCAGAGCAGAAGAGTGATATCACTGATTCTTGCTCTCAGATGATCCTTCAACTCCATAACGTCTATGATCCAAACAAGATCAATGTCAGGATTAAAATTGTTTCTGGATCACCTTGTGGAGCAGTGGCAGCAGAAGCCAAGAAAGCACAAGCTAATTGGGTCGTATTAGACAAACAGCTCAAACATGAGGAAAAGCGATGCATGGAAGAACTACAGTGTAACATTGTGGTTATGAAGCGTTCTCAACCAAAAGTACTGCGGTTGAATTTGATTGGACCTCAGAAGAAGGACGTTGAAGAAGCAGTTCCATCACCTTCTGAGCAAGATGACATGTCTGAAAAGCGAAGCAAAATAAAGCTTGATTCCTTAAATTCTATCAAAGGGCCAGCGGTAACTCCATCTAGCAGCCCTGAGCTAGGGACACCGTTCACTGCAACTGAAGCTGGTGCTTCATCAGTTTCAAGCTCTGATCCGGGAACTTCACCATTCTTCGTCTCAGAGATGAATTGTGAGTCCAAAAAAGAGGAAACTATCCAGGAAAGTCAAGAGCTTGGTGATACTAATTCAGACACAGAAAGTGAAAGTCTGTCCACGTCTTCAGCAAGCATGAGATACCAACCATGGATCACAGAAATGCTTTTACATCAACAATCATCACAACGCAATGAAGAGAGATCAGAGATATCTCATAGTATACCTCAAGCATCTACAACCAGAGCTTTCCTGGATAAGTATTCTAGGCTTGATAGAGGAGCTGGATTTGAAATCTCAACCTATAGGAATGACTTGGATTTCAGTGGAAATTTAAGAGAAGCAATAGCATTATCTGGAAATGCCCCACCTGGTCCCCCTCCACTGTGCTCAATATGTCAACACAAGGCACCTGTTTTTGGAAAACCTCCAAGATGGTTCAGCTATGCTGAGTTAGAACTTGCTACTGGCGGTTTTTCGCAAGCCAACTTCCTGGCTGAAGGAGGGTTTGGATCTGTTCACAGAGGGATTCTACCAGAAGGACAAGTCATTGCTGTCAAGCAACATAAATTAGCTAGTTCTCAAGGTGATCTTGAATTTTGTTCAGAGGTGGAAGTCCTGAGCTGTGCTCAACACCGGAATGTTGTTATGCTCATTGGGTTCTGCATAGAGGATAAGAGAAGGCTTCTGGTTTATGAGTACATATGCAACGGATCATTGGATTCGCATTTATATGGGCGACAAAAGGATCCATTAGAGTGGTCAGCACGGCAAAAAATTGCTGTGGGTGCAGCTCGTGGATTACGATATCTACATGAAGAGTGCAGAGTAGGTTGTATTATCCACCGTGACATGAGGCCAAACAACATTCTCATTACTCACGATTTTGAACCTCTGGTTGGTGATTTTGGACTAGCTAGGTGGCAGCCTGATGGAGACACAGGTGTGGAAACTAGAGTGATTGGAACATTTGGGTATTTGGCTCCTGAGTATGCTCAAAGTGGTCAAATCACTGAAAAAGCTGATGTTTATTCCTTTGGGGTGGTATTAGTTGAGCTTGTTACTGGGAGAAAAGCTGTGGATCTCACTAGACCAAAGGGACAGCAGTGCCTTACCGAGTGGGCACGACCTCTGTTAGAAGAATATGCTACTGAAGAACTGATTGATCCAAGGCTTGGTAACCACTATTCAGAACATGAGGTCTATTGCATGCTGCATGCTGCCTCATTATGCATACAGCGAGATCCTCAATGTAGACCACGCATGTCACAGGTTCTCCGAATACTAGAGGGTGACATGGTGATGGACACAAATTACATTTCAACTCCAGGCTATGATGCAGGAAACCGAAGTGGTAGACTGTGGTCAGAACCGTTACAAAGACAGCACCATTATAGTGGTCCCCTGTTGGAAGAGTCTCTAGAGTCCTTCAGTGGAAAGCTATCCCTTGACAAGTACAAGCCTTCCTATTGGGGTGATAGGGACAAGGCTAGGAGGGCCTCATGTGAAGATGACATTTGA 2250 0.4449 MSREQQKRGKEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRLWGFPRFAGDCASGIKKYPPGTISEQKSDITDSCSQMILQLHNVYDPNKINVRIKIVSGSPCGAVAAEAKKAQANWVVLDKQLKHEEKRCMEELQCNIVVMKRSQPKVLRLNLIGPQKKDVEEAVPSPSEQDDMSEKRSKIKLDSLNSIKGPAVTPSSSPELGTPFTATEAGASSVSSSDPGTSPFFVSEMNCESKKEETIQESQELGDTNSDTESESLSTSSASMRYQPWITEMLLHQQSSQRNEERSEISHSIPQASTTRAFLDKYSRLDRGAGFEISTYRNDLDFSGNLREAIALSGNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGILPEGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQKDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYATEELIDPRLGNHYSEHEVYCMLHAASLCIQRDPQCRPRMSQVLRILEGDMVMDTNYISTPGYDAGNRSGRLWSEPLQRQHHYSGPLLEESLESFSGKLSLDKYKPSYWGDRDKARRASCEDDI* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00484 749 MobiDBLite consensus disorder prediction 186 201 - -
Lapu10g00484 749 FunFam Dual-specific kinase DSK1-like 11 165 - -
Lapu10g00484 749 Gene3D Phosphorylase Kinase; domain 1 374 477 - -
Lapu10g00484 749 Gene3D Transferase(Phosphotransferase) domain 1 478 684 - -
Lapu10g00484 749 CDD STKc_IRAK 408 674 - -
Lapu10g00484 749 MobiDBLite consensus disorder prediction 268 287 - -
Lapu10g00484 749 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 478 681 - -
Lapu10g00484 749 Pfam Protein tyrosine and serine/threonine kinase 406 671 IPR001245 GO:0004672|GO:0006468
Lapu10g00484 749 MobiDBLite consensus disorder prediction 213 253 - -
Lapu10g00484 749 MobiDBLite consensus disorder prediction 182 201 - -
Lapu10g00484 749 ProSiteProfiles Protein kinase domain profile. 402 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00484 749 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 374 477 - -
Lapu10g00484 749 PANTHER OS01G0750732 PROTEIN 156 680 - -
Lapu10g00484 749 ProSitePatterns Tyrosine protein kinases specific active-site signature. 523 535 IPR008266 GO:0004672|GO:0006468
Lapu10g00484 749 MobiDBLite consensus disorder prediction 206 287 - -
Lapu10g00484 749 SUPERFAMILY Protein kinase-like (PK-like) 386 680 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00484 Lapu-Chr10 7188029 7193805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00484 382 691 Trihelix Transcription Factor Family AT1G70460 50.784 2.72e-100 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lapu10g00484 PK_Tyr_Ser-Thr 3.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00484 - - gmx:100816340 1425.99