Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00480 ATGAATATTTTGACCCTTAGAGCTGTGGAGGAAGCTCCTAATCTCCTCCATGGAACAATTGAAGCTACCATCTTCAATGCCTCACCTTACTCACCTTTATTTCCCTTCAATTGCTTTTGTACAAATGGAAAGCCTGCTTATGTGACTATAAAGATAGACAACCAGAAGTTTGCAAAAACCAGTGAAGAAAGCAACCGTGTGTGGAACCAAACCTTTCAGATTCAATGTGCTCATCCAGCTGATTCATGCATCACCATTACACTGAAAACATCACGTTCTTCCATATTGGGGAAGTTCCATATTCAGGCTCAGCAGCTATTGAAGAAAGGAGGTTTGATCAACGGGTTCTTCCCTCTTCTCATGGATAACGGAAAACCAAACCCAAAACTTAAGTTGAAGTTTATGCTGTGGTTCAAGCCAGCAGATTTGGAACCAAGTTGGGCAAAGATGTTGAGCAATGACTGGGAATATCAAGGGCTGAAGGAGGCCAGCTTCCCACTGAGGTCGAATTGTCATGTTAAACTTTATCATGATGCCCACCATTCTTCAGCTTTTCAACCTCCCTTTGATCTATGTGGAGCTCCAAAGAAGCTATGGGAGGATGTCTATAAAGCCATTGAGGGTGCAAAGTATTTAGTTTATATTGCCGGCTGGTCCTTCAATCCCATGATGGTTCTGGTTAGAGATCCTCATACAGAAATCCCACATGCCAGAGGAATTAAGTTAGGTGACCTATTAAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGCTTTGGGATGATGAAACATCTTTACCCTTTGTTAAGAACAAAGGCGAATTGAACAACCAAGATGAGGAAGCTTTTGCTTTTTTCAACCACACAAAAGTAATATGCAGAAAGTGTCCAAGATTACACCGTATGTTCCCCACACTATTTGCTCACCATCAGAAGACTATAACAGTGGACACAAAAGCACCCAAATCTGTTGATGATAGAGAGCTTATGAGCTTTGTGGGTGGATTGGATTTGTGTGATGGAAGATATGATACAGAGCAGCACTCATTGTTTCAAACACTCATTAGGGAATCTCATTGCTATGACTTCTACCAAACAAGCATTGAAGGAGCTAGCCTCAACAAAGGAGGGCCAAGGGCACCTTGGCATGATGCTCACGCTTGTATTATTGGTGAGGCTGCTTGGGATGTGTTAACCAATTTTGAGCAGAGATGGACAAAGCAGTGTGATCCTTCTTTTCTAATCCCTTCTAGCACCTTGGCAAATCTTATGCCAAAAACAAGCTCAAGCACTCCTATGGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTCTCAGTTGGTGAGTTGTCTACAAAGTCAACTGTGGAGAGGAGCATCCATGAAGCTTATGTTGAAGCAATAAGGCGTGCTGAAAGGTTTATATACATTGAAAGCCAATATTTCATTGGGGGATGCCATTGGTGGAAGAAAGATAGGCACTGTGGCTGCAATAATCTAATTCCCATTGAAATTGCACTGAAGGTGGTTAGTAAGATTAAGGCAAAGGAGAGATTTGCTGTGTACATAGTCATACCAATGTGGCCAGAAGGAGAGCCTGAAAGTGAACCTGTTCAAGATATACTGTATTGGACTAGAGAAACAATGGCAATGATGTATAGGTTGATTGGAGAAGCCATACAAGAAAATGGGCAACCAGGACACCCTAAAGACTACTTGAATTTCTTCTGTCTTGCAAATAGGGAGCAGAAGGGACCAGGGGAGTATCTTCCACTAGATTCACCCCAACCTGAAACTCAATACTGGAATGCTCAAAAAAATAGGAGATTCATGGTTTATGTTCACTCCAAATTCATGATAGTGGACGACCTATACATATTGATAGGATCAGCTAATGTAAACCAAAGATCGATGGACGGGCAAAGGGACACTGAGATTGCCATAGGATGCTACCAGTCTCAAGATGGAGATGATAAGCACCAAATGAACCTAGATGATATTCAAGCCTTTAGAATGTCTCTATGGTATGAGCACACAGTGAGCTGTGATGAATTGTTCTTAGAGCCAGAAAGATTGGAATGTGTGGAGAGAATGAGATCAATAGGAGATGAAATGTGGGAAATCTACAGCAGTGAAGAAATTAGGGACATGGAAAGTGTGCACCTTGTGACTTACCCTTTGAGAGTAACACCAGAAGGGTATGTGAAGGACCTCAGTGATGGAGTTCATTTTCCTGATACAAATTCTCTGGTCAAAGGCAAAAGGTCTAAAATATTGCCACCTATCTTTACCACTTAG 2310 0.419 MNILTLRAVEEAPNLLHGTIEATIFNASPYSPLFPFNCFCTNGKPAYVTIKIDNQKFAKTSEESNRVWNQTFQIQCAHPADSCITITLKTSRSSILGKFHIQAQQLLKKGGLINGFFPLLMDNGKPNPKLKLKFMLWFKPADLEPSWAKMLSNDWEYQGLKEASFPLRSNCHVKLYHDAHHSSAFQPPFDLCGAPKKLWEDVYKAIEGAKYLVYIAGWSFNPMMVLVRDPHTEIPHARGIKLGDLLKKKAEEGVAVRVMLWDDETSLPFVKNKGELNNQDEEAFAFFNHTKVICRKCPRLHRMFPTLFAHHQKTITVDTKAPKSVDDRELMSFVGGLDLCDGRYDTEQHSLFQTLIRESHCYDFYQTSIEGASLNKGGPRAPWHDAHACIIGEAAWDVLTNFEQRWTKQCDPSFLIPSSTLANLMPKTSSSTPMERNWKVQVYRSIDHVSVGELSTKSTVERSIHEAYVEAIRRAERFIYIESQYFIGGCHWWKKDRHCGCNNLIPIEIALKVVSKIKAKERFAVYIVIPMWPEGEPESEPVQDILYWTRETMAMMYRLIGEAIQENGQPGHPKDYLNFFCLANREQKGPGEYLPLDSPQPETQYWNAQKNRRFMVYVHSKFMIVDDLYILIGSANVNQRSMDGQRDTEIAIGCYQSQDGDDKHQMNLDDIQAFRMSLWYEHTVSCDELFLEPERLECVERMRSIGDEMWEIYSSEEIRDMESVHLVTYPLRVTPEGYVKDLSDGVHFPDTNSLVKGKRSKILPPIFTT* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00480 769 SMART pld_4 306 343 IPR001736 GO:0003824
Lapu10g00480 769 SMART pld_4 614 641 IPR001736 GO:0003824
Lapu10g00480 769 Pfam Phospholipase D C terminal 687 758 IPR024632 -
Lapu10g00480 769 Gene3D Endonuclease Chain A 185 437 - -
Lapu10g00480 769 Gene3D C2 domain 34 139 IPR035892 -
Lapu10g00480 769 PANTHER PHOSPHOLIPASE D 15 751 IPR015679 -
Lapu10g00480 769 Pfam C2 domain 46 119 IPR000008 -
Lapu10g00480 769 SUPERFAMILY Phospholipase D/nuclease 165 416 - -
Lapu10g00480 769 SUPERFAMILY Phospholipase D/nuclease 438 697 - -
Lapu10g00480 769 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 15 134 IPR035892 -
Lapu10g00480 769 Gene3D Endonuclease Chain A 454 659 - -
Lapu10g00480 769 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 306 343 IPR001736 GO:0003824
Lapu10g00480 769 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 614 641 IPR001736 GO:0003824
Lapu10g00480 769 Pfam Phospholipase D Active site motif 617 641 IPR001736 GO:0003824
Lapu10g00480 769 Pfam Phospholipase D Active site motif 307 343 IPR001736 GO:0003824
Lapu10g00480 769 PIRSF PLD_plant 8 769 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00480 Lapu-Chr10 7165598 7169289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00480 38 769 Phospholipase D Gene Family (Wang group) AT1G55180 61.373 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00480 K01115 - gmx:100812642 1506.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00480 10 7165598 7169289 Lapu10g00480 10 7165598 7169289 ECH
Lapu5g00226 5 1856893 1859821 Lapu10g00480 10 7165598 7169289 PCT