Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00476 ATGACAGATGCTGAGGTTAATGAGTACCGACAGCAGAGGGAAATAACTGTTGAAGGTCGAGATATCCCCAAGCCTGTCAAGACCTTTCAAGATGCTGGTTTTCCAGAATACGTGATGCAAGAAATTACAAAAGCTGGTTTTACCGAGCCTACACCCATTCAATCTCAAGGTTGGCCCATGGCTTTGAAGGGGCGTGATCTGATAGGAATAGCAGAAACAGGTTCAGGGAAGACACTTGCTTACTTGTTACCTGCCATTGTGCACGTTAATGCTCAGCCAATTCTAGATCCTGGAGATGGACCTATTGTGTTAGTATTGGCTCCAACTCGGGAACTTGCCGTTCAAATACAACAAGAGGCTACTAAATTTGGTGCATCATCTAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCGAAGGGACCTCAGGTGCGTGATCTCCAGAAAGGTGTCGAAATTGTAATTGCCACTCCGGGAAGGTTAATTGATATGCTTGAATCAAATCATACCAACTTACAGAGGGTCACATATCTTGTATTGGATGAAGCTGATAGGATGTTGGATATGGGGTTTGATCCTCAGCTGCGGAAGATTGTTTCTCAGATCCGGCCGGACCGTCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTCGAACAATTGGCACGGAAGTTCCTTTACAACCCATACAAAGTAATTATAGGGTCTGAAGATTTAAAAGCTAACCATGCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAATTGGTGAAGTTGCTGGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACCAAAAAAGGATGTGATCAGATCACTAGGCAACTCCGCATGGATGGCTGGCCAGCACTTTCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCGGAATTTAAATCGGGAAAAAGTCCTATTATGACTGCAACAGATGTTGCAGCCCGTGGTTTAGATGTGAAGGATGTGAAATATGTAATAAATTATGACTTCCCGGGGTCACTTGAGGACTATGTTCATCGCATTGGGCGGACGGGTAGAGCCGGTGCAAAAGGAACTGCCTACACATTCTTCACGGCTGCTAATGCTAGATTTGCAAAGGAACTTATAGCCATACTAGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCTGCCTTCAGGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTGA 1302 0.4547 MTDAEVNEYRQQREITVEGRDIPKPVKTFQDAGFPEYVMQEITKAGFTEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLQRVTYLVLDEADRMLDMGFDPQLRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVIIGSEDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMGRGAPPLPSGPRGFQDRGRGYGSSRPWS* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00476 433 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 27 55 IPR014014 GO:0003724
Lapu10g00476 433 Gene3D - 238 407 IPR027417 -
Lapu10g00476 433 SMART helicmild6 286 367 IPR001650 -
Lapu10g00476 433 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 179 187 IPR000629 -
Lapu10g00476 433 FunFam probable ATP-dependent RNA helicase DDX17 1 236 - -
Lapu10g00476 433 Gene3D - 1 237 IPR027417 -
Lapu10g00476 433 Pfam DEAD/DEAH box helicase 51 222 IPR011545 GO:0003676|GO:0005524
Lapu10g00476 433 FunFam ATP-dependent RNA helicase RhlB 237 409 - -
Lapu10g00476 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 382 IPR027417 -
Lapu10g00476 433 CDD SF2_C_DEAD 246 376 - -
Lapu10g00476 433 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 261 406 IPR001650 -
Lapu10g00476 433 CDD DEADc_DDX5_DDX17 38 233 - -
Lapu10g00476 433 MobiDBLite consensus disorder prediction 403 433 - -
Lapu10g00476 433 SMART ultradead3 46 249 IPR014001 -
Lapu10g00476 433 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 58 233 IPR014001 -
Lapu10g00476 433 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 19 405 - -
Lapu10g00476 433 Pfam Helicase conserved C-terminal domain 258 367 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00476 Lapu-Chr10 7139885 7146037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00476 14 387 Eukaryotic Initiation Factors Gene Family AT3G19760 33.867 4.29e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00476 K12823 - gmx:100781619 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00476 10 7139885 7146037 Lapu10g00476 10 7139885 7146037 ECH