Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00465 ATGGAGATGAAGGGTTTTGTGTTCAACCAACAGCAGCAGCCAGTAGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCTAGTGCATCCTCAGGCAACAGAACTGAAATTGGAACCAGTTACCCTCAACAATACTTGGCTCCACCACCAACTCAGACTCAGCCACAAAAGAAAAAGAGAAACCTCCCTGGTAACCCAGACCCTGATGCTGAAGTTATAGCTTTGTCCCCCAAGAGTCTTCTGGCCACAAACAGGTTCATCTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAACCTCCAACTTCACAGAAGAGGGCATAATTTGCCTTGGAAGCTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAACCAAATTGTGTGCATCATGACCCATCAAGAGCTCTGGGAGACCTAACTGGAATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAAAAATATGCAGTTCAATCAGATTGGAAAGCCCATTCCAAAACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAAGAGAGTGCAAGAGCAATCACGGGCACAGCCAATAACCAACCTCTTCCCCCACAACCTTCTTCCTCTCACCACCACCACATGAGCCTCCCAACCCAATTCAACCCTCAAAATCTCCATTCCTTCTCATTGAAAAAGGAGCAGCAAAGTTTCAATGTTAGGCCAGAAATGCCCCCTTGGCTGGGCCCACCAACAACAGTTGATCATCTCTCCTCATCCTCATCCATAATGTTCTCTCCTCCTCCACACCAAGAAAACCCTAACCCTAGTCTTGGTCCCACTCTTGCTGCCTACCAAACAGTCCCTAACCCTTCCCCACACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACTATGAGCAGAAGTGGTTCCTCACCAGCCATGGCAAGGGCCCACCATCAGGTTCACATGACTTCTTCTGCAGATTCTGGCACTGCTCACTTTGGCTTGAACTTGTCCTCACGTGCAGACACCACCACCACCACTTCAACAACAACAACGACTGTTACTACTAACACTGCTACAGTGCTTGGCCATGGCTTATTATCATCATCATCACCTTTGGGGAATAAAGCTGCCACTGCTGTGTCTTCTGCTCCATCCCTTCTTCATGATGTTATCAACTCTTTCTCTTCTCCTTCTGCCTTCGAAGGAACCCCTTTTGAGGATGCATTTGGTGGCATTCAGAGTTCAAAGAAACTTGATGATGATAGCTTGTATTTGCATGACAGCTTCTCAAAAAGAAGTGGTGCAGCTGGAAATGAAGGGTTGACCAGAGATTTCTTGGGTCTTAGGCCTCTCTCTCATACTGATATTCTCACCATTGCTGGCCTTGGAAACTGCATTCATGATCAACAAAACCAATCTCAAAAGCCATGGCAAGGTTAG 1554 0.471 MEMKGFVFNQQQQPVVEENMSNLTSASGEASASSGNRTEIGTSYPQQYLAPPPTQTQPQKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGTANNQPLPPQPSSSHHHHMSLPTQFNPQNLHSFSLKKEQQSFNVRPEMPPWLGPPTTVDHLSSSSSIMFSPPPHQENPNPSLGPTLAAYQTVPNPSPHMSATALLQKAAQMGATMSRSGSSPAMARAHHQVHMTSSADSGTAHFGLNLSSRADTTTTTSTTTTTVTTNTATVLGHGLLSSSSPLGNKAATAVSSAPSLLHDVINSFSSPSAFEGTPFEDAFGGIQSSKKLDDDSLYLHDSFSKRSGAAGNEGLTRDFLGLRPLSHTDILTIAGLGNCIHDQQNQSQKPWQG* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00465 517 MobiDBLite consensus disorder prediction 1 74 - -
Lapu10g00465 517 Pfam Zinc-finger double-stranded RNA-binding 89 111 IPR022755 -
Lapu10g00465 517 Gene3D Classic Zinc Finger 143 222 - -
Lapu10g00465 517 MobiDBLite consensus disorder prediction 227 251 - -
Lapu10g00465 517 FunFam protein indeterminate-domain 5, chloroplastic-like 143 222 - -
Lapu10g00465 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 493 IPR031140 -
Lapu10g00465 517 SUPERFAMILY beta-beta-alpha zinc fingers 88 185 IPR036236 -
Lapu10g00465 517 MobiDBLite consensus disorder prediction 1 63 - -
Lapu10g00465 517 FunFam protein indeterminate-domain 12-like 68 136 - -
Lapu10g00465 517 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Lapu10g00465 517 Gene3D Classic Zinc Finger 70 136 - -
Lapu10g00465 517 SMART c2h2final6 89 111 IPR013087 -
Lapu10g00465 517 SMART c2h2final6 165 185 IPR013087 -
Lapu10g00465 517 SMART c2h2final6 130 160 IPR013087 -
Lapu10g00465 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00465 Lapu-Chr10 7026823 7030503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00465 1 342 IDZ Gene Family AT1G55110 60.340 1.65e-129 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu10g00465 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00465 K25870 - gmx:100808344 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00241 5 1994078 1997968 Lapu10g00465 10 7026823 7030503 PCT